Announcement: CTAT-LR-Fusion Release v1.0.0
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Brian Haas
Oct 8, 2024, 12:00:36 PM10/8/24
to Trinity_CTAT_users
Greetings all,
A new release for CTAT-LR-Fusion (fusion detection using long isoform read sequences) is now available:
https://github.com/TrinityCTAT/CTAT-LR-fusion/releases/tag/ctat-LR-fusion-v1.0.0
https://github.com/TrinityCTAT/CTAT-LR-fusion/releases/tag/ctat-LR-fusion-v1.0.0
Release notes as follows:
# ctat-LR-fusion v1.0.0 Oct 8, 2024
- works well for both ONT and PacBio under default params.
- excludes alignment overlaps between gene pairs that fall within sequence-similar regions, and requires at least 25 bases (default) of exon overlap in the remaining regions.
- excluding neighbor-overlap gene pairings and additional annotation-based filtering between phase-1 and phase-2.
- added --FI_extra_params custom parameter to pass through STAR parameters to F
- included option for --examine_coding_effect
- works well for both ONT and PacBio under default params.
- excludes alignment overlaps between gene pairs that fall within sequence-similar regions, and requires at least 25 bases (default) of exon overlap in the remaining regions.
- excluding neighbor-overlap gene pairings and additional annotation-based filtering between phase-1 and phase-2.
- added --FI_extra_params custom parameter to pass through STAR parameters to F
- included option for --examine_coding_effect
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