Can't extract data from infercnv object

[Dmitry Kazantsev]

Hello,

I'm using inferCNV to compare tumors before and after therapy failure. I'd like to know more about inferCNV object and what data I can extract from it. To be mor specific, in my output plot, I see am amplified region - am I able to "zoom in" and inspect what genes were inferred to be amplified and at what copy number? Can that info be extracted as genomic regions?

Thanks in advance, and thanks for making inferCNV!

Best regards

Dmitrij Kazancev

1st Medical Faculty, Charles University in Prague, Czech Republic