Yeast CTAT genome

20 views

Skip to first unread message

Sean Evans

unread,

Nov 7, 2024, 5:58:00 AM11/7/24

to Trinity_CTAT_users

Hello,

Is there any possibility of creating a S. cerevisiae CTAT genome for fusion transcript quantification? FASTA file conversion feasible?

Thank you in advance

Sean

Brian Haas

unread,

Nov 7, 2024, 9:31:14 AM11/7/24

to Sean Evans, Trinity_CTAT_users

Hi,

You can build your own ctat genome lib via: https://github.com/TrinityCTAT/ctat-genome-lib-builder/wiki

It's not quick and easy, but it's generally possible.

Hope this helps!

--
You received this message because you are subscribed to the Google Groups "Trinity_CTAT_users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to trinity_ctat_us...@googlegroups.com.
To view this discussion visit https://groups.google.com/d/msgid/trinity_ctat_users/df29c616-89ab-4d3a-9c59-bbf683451dafn%40googlegroups.com.