Trinity_CTAT_users

Greetings all, A new version of CTAT-Mutations is now available: https://github.com/TrinityCTAT/ctat-

Hi CTAT-LR-fusion team, I used CTAT-LR-fusion to detect fusion events in PacBio and Nanopore long-

Hi, We have docker and singularity images available in case that's an option for you: https://

Hi Robert, Would you be able to tar up and privately share with me the directory: /lustre1/project/

HI there I have the exactly same problem and don't know how to solve it. Maybe you can tell me

Greetings all, We have a new release for CTAT-Mutations (v4.1.0): https://github.com/NCIP/ctat-

Thank you for developing such a great tool! Currently, when I perform sample-by-sample CNV

ImferCNV devoured memory on my 100k cell data. What's the mem on your node? - Mike On Fri, Mar 8,

Greetings, all! Some have been asking for a newer CTAT genome lib for Gencode. We now have one

Greetings all, We have a new release for CTAT-LR-Fusion (v0.13.0): https://github.com/TrinityCTAT/

Hello All, I am a novice user attempting to follow the example posted on the infercnv wiki (https://

Hi, Responses below On Wed, Jan 10, 2024 at 12:33 AM MH <minhu...@gmail.com> wrote: Happy

Greetings and Happy New Year! We have a new release available for CTAT-LR-fusion for fusion detection

Hi, Thanks a lot. This worked for me as well. Can you also point me to how I can understand the

Thanks, Robert! We're actually submitting our proposal today and maxed out our number of allowed

Hi Kay, We haven't done anything with time series data using infercnv. It could definitely be an

Hi Simran, I recently added new ctat genome libs here: https://data.broadinstitute.org/Trinity/

Hi all! Our funding for Trinity CTAT is quickly expiring and we're soon planning to apply to the

Greetings all. We have a new release for CTAT-LR-Fusion v0.11.0 https://github.com/TrinityCTAT/CTAT-

https://github.com/trinityrnaseq/TrinityFusion/releases/tag/TrinityFusion-v0.4.0 replaces gmap-fusion

Greetings all. We have a new release of our CTAT-Mutations pipeline available: https://github.com/

Hi Holly, It looks like the individual gene annotations were lost during an earlier revision of the

Greetings all, A new release of ctat-LR-fusion is now available: https://github.com/TrinityCTAT/CTAT-

Greetings all, We have a new release for ctat-LR-fusions (v0.9.0) for fusion transcript based on

Hi, We don't have support for that kind of analysis built-in, but you could experiment with doing

Hi, Not sure, actually. We use this with human, mouse, and there have been a few other applications,

Please note the following: There are a handful of modifications that are made to both the reference

Greetings all. We have a new release for ctat-LR-fusion (v0.6.0) for fusion transcript detection from

Greetings all! For those that are working with long read transcriptomes and want to detect fusions,

Dear Brian, Thank you very much for your answer! I think it's clearer for me now. I'll