Install TreEvo on remote computer

[Daniel Gates]

Greetings all,

I have access to a computer in the O'meara lab via ssh but when I
attempt to run my script it doesn't have TreEvo installed as a
package. I've tried simply copying the folder from my computer and
building it and installing it with R CMD INSTALL but it currently says
I don't have permission. I'm pretty sure there should be a way to
install it in my directory but I'm not sure how. Any help would be
appreciated!

Thanks,
-Dan

[Brian O'Meara]

I'm back from NESCent and such so should be more available. Which computer was it?

Thanks,
Brian

_______________________________________
Brian O'Meara
Assistant Professor
Dept. of Ecology & Evolutionary Biology
U. of Tennessee, Knoxville
http://www.brianomeara.info

Students wanted: Applications due Dec. 15, annually
Postdoc collaborators wanted: Check NIMBioS' website
Calendar: http://www.brianomeara.info/calendars/omeara

[dga...@huskers.unl.edu]

Hi Brian,

It's omearalab10

Let me know if you need any more info

Cheers,
-Dan

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From: treevo-...@googlegroups.com [treevo-...@googlegroups.com] on behalf of Brian O'Meara [bom...@utk.edu]
Sent: Tuesday, May 29, 2012 10:40 AM
To: treevo-...@googlegroups.com
Subject: Re: Install TreEvo on remote computer

[Brian O'Meara]

Okay, Dan. It's restarting, and you should have admin access. No bitcoin mining.

Brian

_______________________________________
Brian O'Meara
Assistant Professor
Dept. of Ecology & Evolutionary Biology
U. of Tennessee, Knoxville
http://www.brianomeara.info

Students wanted: Applications due Dec. 15, annually
Postdoc collaborators wanted: Check NIMBioS' website
Calendar: http://www.brianomeara.info/calendars/omeara

[Derrick Zwickl]

HI Dan,

It sounds like Brian has got you set up, but in general it should be possible to install packages where ever you want with R CMD INSTALL, take a look at the -l option in
R CMD INSTALL --help

I think that you then need to set R_LIBS_USER to include that location, or set it within R.  This is what I've done when running packages on a number of clusters that I don't have root access on.

Derrick

[dga...@huskers.unl.edu]

Thanks guys, it seems like it's running now so I think it should be good to go!

-Dan

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From: treevo-...@googlegroups.com [treevo-...@googlegroups.com] on behalf of Derrick Zwickl [dzw...@gmail.com]
Sent: Tuesday, May 29, 2012 11:36 AM