How to upload VCF alone without clinical data

[tria...@connect.hku.hk]

Hi,

 I want to ask about uploading the vcf type file. It is said in instructions that vcf files need to be uploaded only after clinical data is uploaded, but we have some vcf file that don't really have clinical data

. I have tried for some times but the .vcf file cannot be uploaded alone, as a mapping file with at least two columns is needed. Could you give me some suggestions on the problem?

Thank you!

[Annick....@sanofi.com]

Hello,

 

You can probably just load subject identifiers as low dimensional (“clinical”) data first, then the VCF. To load subject identifiers, you just need to produce a file with 2 identical columns containing the subject identifiers, one will be considered as SUBJ_ID, the other as data to load in the tranSMART data tree.

Annick

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[tria...@connect.hku.hk]

I followed your instructions and successfully uploaded my VCF files.
Thank you very much!