Re: Error to run transdecoder on Terminal

[Brian Haas]

Hi,

It looks like you need to install a perl module:  URI::Escape

If you have 'cpanm' installed (recommended), then you can just:

   cpanm install URI::Escape

best,

~b

On Wed, Sep 25, 2019 at 4:48 AM Azrul Afiq <azrul....@gmail.com> wrote:

Dear All.

I tried to run the 1st step as in

https://github.com/TransDecoder/TransDecoder/wiki

However this output were shown.

Can anyone assist me?

(base) azrul@azrul-X556UQK:~$ TransDecoder.LongOrfs -t '/home/azrul/Desktop/AnnotatedSSRFasta.fasta'
Can't locate URI/Escape.pm in @INC (you may need to install the URI::Escape module) (@INC contains: /usr/lib/transdecoder/PerlLib /home/azrul/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0/x86_64-linux /home/azrul/perl5/perlbrew/perls/perl-5.28.0/lib/site_perl/5.28.0 /home/azrul/perl5/perlbrew/perls/perl-5.28.0/lib/5.28.0/x86_64-linux /home/azrul/perl5/perlbrew/perls/perl-5.28.0/lib/5.28.0) at /usr/lib/transdecoder/PerlLib/Gene_obj.pm line 15.
BEGIN failed--compilation aborted at /usr/lib/transdecoder/PerlLib/Gene_obj.pm line 15.
Compilation failed in require at /usr/bin/TransDecoder.LongOrfs line 65.
BEGIN failed--compilation aborted at /usr/bin/TransDecoder.LongOrfs line 65.
(base) azrul@azrul-X556UQK:~$

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Brian J. Haas
The Broad Institute
http://broadinstitute.org/~bhaas