Resuming transcriptome assembly

[John Cornelius]

Hello, I was running a Trans-ABySS assembly when the computer it was running on ran out of disk space. I've since freed up some space, is there a way to resume a transcriptome build? Or do I need to begin a new run? Thanks.

[Ka Ming Nip]

Hi John,

If you are using version 1.5.*, then re-runing the same command would resume the assembly from the last checkpoint.

Hope that helps!!!

Ka Ming

--
Ka Ming Nip
GrasPods Wellness Coordinator
Graduate Student | Dr. Inanc Birol Lab (BTL)
Canada's Michael Smith Genome Sciences Centre
________________________________________
From: trans...@googlegroups.com [trans...@googlegroups.com] On Behalf Of John Cornelius [jcor...@asu.edu]
Sent: June 6, 2016 9:47 AM
To: Trans-ABySS
Subject: Resuming transcriptome assembly

Hello, I was running a Trans-ABySS assembly when the computer it was running on ran out of disk space. I've since freed up some space, is there a way to resume a transcriptome build? Or do I need to begin a new run? Thanks.

--
You received this message because you are subscribed to the Google Groups "Trans-ABySS" group.
To unsubscribe from this group and stop receiving emails from it, send an email to trans-abyss...@googlegroups.com<mailto:trans-abyss...@googlegroups.com>.
For more options, visit https://groups.google.com/d/optout.