Found workaround by changing tunnels config to use plink instead of tortoiseplink and now svn+ssh is working again, albeit with annoying command prompt appearing often.
Using tortoiseplink, /var/log/secure on svn server just logs "Connection closed by <IP>"
With plink I get "Accepted publickey for <user> from <IP> port <P> ssh2" / "session opened" / "session closed" as expected.