Hello,
My data is from a Siemens 7T, T2 is from a T1 using fat_proc_imitT2w, and tortiose version is 2.5.2b. I get an error message when I run the program and any help would be very appreciated.
When I run diff_prep I get the following error :
Trans.p:
0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Traceback Report from APPLY_GUI_SETTINGS:
% INTERPOLATE: Number of parameters must agree with dimensions of argument.
% Execution halted at: CST_EVAL_MECC3D 76
% O_MECC3D 42
% MECC3D 263
% RU3D_PNI3 549
% RUN_DMC_PARALLEL 70
% DIFFPREP 331
% APPLY_GUI_SETTINGS 256
% DIFFPREP_GUI_EVENT 286
% XMANAGER_EVLOOP_STANDARD 478
% XMANAGER 710
% DIFFPREP_GUI 432
% IDLRTMAIN 170
% $MAIN$
% Program caused arithmetic error: Floating underflow
% Program caused arithmetic error: Floating illegal operand
these are my parameters:
tration='on'
smoothing='on'
smoothing_algorithm='PM'
gaussian_variance=0.33330000
kappa=35.000000
automatic_noise_computation='on'
automatic_kappa='on'
verbose=6
nbins=48
img_resample_res='1.5000000,1.5000000,1.5000000'
structural_output_res='0.74218800,0.74218800,0.70000000'
mask_fsl='on'
ITK_structural_registration='on'
initial_global_search='on'
upsampling=all
upsampling_factor=2.0000000
upsampling_method='bicubic'
scale_signal_factor=1
cropped_FOV='122.00000,122.00000,37.000000'
bspline_EPI_correction='on'
BS_EPI_parameters=5
eddy_correction_for_B0_to_structural='on'
eddy_correction_for_B0='on'
image_format='NIFTI'
output_endianism=big
write_interpolated_variance='on'
compute_corr_matrix=off
start_at_step=0
stop_at_step=5
keep_step4_output='on'
keep_intermediate_data='on'
endian_raw_in=BIG
original_columns=1708
original_rows=1708
slice=2
nim=93
phase_encode_direction='vertical'
x_field_of_view=1708.00
y_field_of_view=1708.00
rawimageformat='float'
bmatrixfile='dti_up.bmtxt'
slice_gap=0.600000
slice_thickness=1.00000
image_plane='axial'
raw_image_path_filename='dti_up.path'
image_orient=0
upsampling=all
Loaded bmatrix
Index of image chosen for masking 0
epsilon='0.0001>'
brk_eps=0.0005
opt_par='1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1'
opt_par_init='0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0'
init_grd_step='2.5,2.5,2.5,0.04,0.04,0.04,0.02,0.02,0.02,0.002,0.002,0.002,0.0007,0.0007,0.0001,0.00001,0.00001,0.00001,0.00001,0.00001,0.00001'
verbose=6
cost_function=nmi
center_trg='0.,0.,0.'
center_src='0.,0.,0.'
res_offset=0
num_grd_halve=4
num_res=3
NBINS : 48