TORTOISEDTI

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1–30 of 46

Welcome to TORTOISEDTI support group..

To download the software, and the detailed manuals, visit http://www.tortoisedti.org

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Meghan Robinson

5/1/19

EstimateTensorNLLSRestore

Hello, I'm trying to use the new command-line version of RESTORE, and I'm getting an error

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EstimateTensorNLLSRestore

Hello, I'm trying to use the new command-line version of RESTORE, and I'm getting an error

5/1/19

8/23/18

Hi, I am new to TORTOISE. I am trying to run diffprep on a mapmri type acquisition. Below is the

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Hi, I am new to TORTOISE. I am trying to run diffprep on a mapmri type acquisition. Below is the

8/23/18

7/19/18

DIFFPREP compatibility with older versions

Hello, I'm planning on re-running DIFFPREP in TORTOISE 3.1.1 for about 1000 scans. Those scans

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DIFFPREP compatibility with older versions

Hello, I'm planning on re-running DIFFPREP in TORTOISE 3.1.1 for about 1000 scans. Those scans

7/19/18

6/25/18

Linux version for ComputeGlyphMaps?

Hello Tortoise Developers, What Linux OS and version was ComputerGlyphMaps (v312) compiled on? I have

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Linux version for ComputeGlyphMaps?

Hello Tortoise Developers, What Linux OS and version was ComputerGlyphMaps (v312) compiled on? I have

6/25/18

6/17/18

interpolation error: number of parameters must agree with the dimensions of your argument

Hello, My data is from a Siemens 7T, T2 is from a T1 using fat_proc_imitT2w, and tortiose version is

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interpolation error: number of parameters must agree with the dimensions of your argument

Hello, My data is from a Siemens 7T, T2 is from a T1 using fat_proc_imitT2w, and tortiose version is

6/17/18

Meghan Robinson

5/25/18

DIFFCALC Xmanager error

I'm running into a problem when I run DIFFCALC. My goal is to use iRESTORE to see if we can clean

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DIFFCALC Xmanager error

I'm running into a problem when I run DIFFCALC. My goal is to use iRESTORE to see if we can clean

5/25/18

5/22/18

How to avoid time out while running DIFF_PREP on biowulf?

Hello, I am writing regarding issues I am having with trying to run DIFF_PREP. I would love to have

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How to avoid time out while running DIFF_PREP on biowulf?

Hello, I am writing regarding issues I am having with trying to run DIFF_PREP. I would love to have

5/22/18

4/13/18

Processing Error using calcvm to Estimate Signal SD

Our group has been using DTI Tortoise for a final to process our DTI data. We are currently using

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Processing Error using calcvm to Estimate Signal SD

Our group has been using DTI Tortoise for a final to process our DTI data. We are currently using

4/13/18

4/10/18

Cannot run tensor fitting to check Imported data

Hi, (Note: I am using version 3.1.0 on MacOS 10.11.6 El Capitan because I could not get 3.1.1 to run

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Cannot run tensor fitting to check Imported data

Hi, (Note: I am using version 3.1.0 on MacOS 10.11.6 El Capitan because I could not get 3.1.1 to run

4/10/18

ae...@hawk.iit.edu

2/7/18

Limit number of CPUs used for DIFF PREP processing

Hello, I am attempting to use the DIFFPREPV31 binaries on a cluster that has a strict requirement on

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Limit number of CPUs used for DIFF PREP processing

Hello, I am attempting to use the DIFFPREPV31 binaries on a cluster that has a strict requirement on

2/7/18

Sandra Hanekamp

1/18/18

Suggestions on how to proceed without a T2

Hi, I'm working on creating a connectome using diffusion data. I successfully processed one

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Suggestions on how to proceed without a T2

Hi, I'm working on creating a connectome using diffusion data. I successfully processed one

1/18/18

Bryan Fishman, Pablo Velasco2

11/21/17

DR-BUDDI Memory Allocation Error (out of memory)

Hi All, I got a similar error (maybe the same) in one of the intermediate steps of Dr-Buddi. The

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DR-BUDDI Memory Allocation Error (out of memory)

Hi All, I got a similar error (maybe the same) in one of the intermediate steps of Dr-Buddi. The

11/21/17

10/26/17

Which file contains the tensor matrix?

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Which file contains the tensor matrix?

10/26/17

Matthew Hoptman

10/25/17

Registration of b0 to standard space template

Hi all, I'm not sure from the manual how to enter the template in to the DTIPREP GUI so that I

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Registration of b0 to standard space template

Hi all, I'm not sure from the manual how to enter the template in to the DTIPREP GUI so that I

10/25/17

10/1/17

Import Error: CONVERT_INPUT_IMAGES_LISTFILE_V3--> FILE_MKDIR: Unable to create directory: /home/xAXDTIHIGHs1001a1010_proc

Hello Community, I receive an import error - unable to create directory - when importing the .nii

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Import Error: CONVERT_INPUT_IMAGES_LISTFILE_V3--> FILE_MKDIR: Unable to create directory: /home/xAXDTIHIGHs1001a1010_proc

Hello Community, I receive an import error - unable to create directory - when importing the .nii

10/1/17

7/21/17

Corrupted File Output

After I successfully completed the diffprep processing, I tried to run dr_buddi. While I do receive

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Corrupted File Output

After I successfully completed the diffprep processing, I tried to run dr_buddi. While I do receive

7/21/17

7/18/17

How to obtain the Images of Eigenvalues

Hi, I would like to get the images of the eigenvalues, I can see using calcvm, so I can calculate

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How to obtain the Images of Eigenvalues

Hi, I would like to get the images of the eigenvalues, I can see using calcvm, so I can calculate

7/18/17

1/25/17

Segmentation fault in OSX

Hello, I'm trying to run v2.5.2b in a Mac (10.11.5) but I get this error: IDL Version 8.4, Mac OS

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Segmentation fault in OSX

Hello, I'm trying to run v2.5.2b in a Mac (10.11.5) but I get this error: IDL Version 8.4, Mac OS

1/25/17

1/23/17

DR-BUDDI version

Greetings, I recently received a message about the use of DR-BUDDI VERSION V 2.5.1. Is there a way to

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DR-BUDDI version

Greetings, I recently received a message about the use of DR-BUDDI VERSION V 2.5.1. Is there a way to

1/23/17

1/19/17

transformations after exporting

Hello, I exported the raw images (after DIFF_PREP) using the FSL sorted option (first button). I'

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transformations after exporting

Hello, I exported the raw images (after DIFF_PREP) using the FSL sorted option (first button). I'

1/19/17

11/23/16

Segfault in Mac

Hello, I'm trying to run v2.5.2 in a Mac (10.11.5) but I get this error: IDL Version 8.4, Mac OS

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Segfault in Mac

Hello, I'm trying to run v2.5.2 in a Mac (10.11.5) but I get this error: IDL Version 8.4, Mac OS

11/23/16

Akshay Khushu, Nayak, Amritha (NIH/NICHD) [F]2

9/28/16

Different Maps Available

Hello Akshay, The following page will describe the variables that are derived from the tensor in

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Different Maps Available

Hello Akshay, The following page will describe the variables that are derived from the tensor in

9/28/16

8/29/16

Export multiple scans

Hello, I have hundreds of scans processed in DIFF-CALC, and they have already been exported to use in

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Export multiple scans

Hello, I have hundreds of scans processed in DIFF-CALC, and they have already been exported to use in

8/29/16

6/22/16

error in DIFFPREP mac

Hello, I'm getting the attached error after a few hours running "apply" in DIFFPREP,

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error in DIFFPREP mac

Hello, I'm getting the attached error after a few hours running "apply" in DIFFPREP,

6/22/16

6/17/16

.path files after volume removal

Hello, I'm wondering why the .path for data gets re-indexed after removing volumes, but not the .

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.path files after volume removal

Hello, I'm wondering why the .path for data gets re-indexed after removing volumes, but not the .

6/17/16

Indra Montserrat Fonseca Alfaro, Bob Dawe2

5/27/16

Error on data processing stage

I realize this is several months old, but I had a similar problem and it was very frustrating, so I

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Error on data processing stage

I realize this is several months old, but I had a similar problem and it was very frustrating, so I

5/27/16

4/3/16

applicability with qball/DSI sequences

dear users, I was interested in using TORTOISE for qball/DSI sequences. Do you think the diffprep and

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applicability with qball/DSI sequences

dear users, I was interested in using TORTOISE for qball/DSI sequences. Do you think the diffprep and

4/3/16

Indra Fonseca, M. Okan Irfanoglu2

3/29/16

Trackvis has a weird orientation convention. You have to only use the images in the TRACKVIS_SAVE

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Trackvis has a weird orientation convention. You have to only use the images in the TRACKVIS_SAVE

3/29/16

3/21/16

Question Regarding QC

Hello, I have recently begun using TORTOISE for motion and eddy current correction prior to TBSS. I

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Question Regarding QC

Hello, I have recently begun using TORTOISE for motion and eddy current correction prior to TBSS. I

3/21/16

Erik Chang, M. Okan Irfanoglu4

2/7/16

Batch processing

Hi Dr. Irfanoglu, Can diffcalc be batch processed? Thanks, Erik On Sat, Feb 6, 2016 at 4:39 AM, Erik

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Batch processing

Hi Dr. Irfanoglu, Can diffcalc be batch processed? Thanks, Erik On Sat, Feb 6, 2016 at 4:39 AM, Erik

2/7/16

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