TIQAM-ProteinDigestor with Peptide input instead of fasta file -- Must be csv file format.

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Mi-Youn Brusniak

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Sep 28, 2009, 11:59:37 AM9/28/09

to Sandra Lövenich, Ruedi Aebersold, ti...@googlegroups.com

Hi Sandra,

When you have a wrong format of input, the exception happen and the screen
you see were happened.
I saw the error when people use non .csv (comma separated file) format.
That's one of reason that I also put Demo Data zip files alone with tutorial
in TIQAM zip file : -)
Set along with tutorial. When we release next TIQAM version, we will add
more informative error message screen.

I attached the input example file for peptide load which is also in
TIQAM-ClassDemoData.zip file.

Since it can happen other users, I cc TIQAM discussion group as well.
Thank you for your report.

All the best,
Mi-Youn

Mi-Youn Brusniak, Ph.D.
Computational Biology
Seattle Proteome Center
mbru...@systemsbiology.org
Tel: (206) 732-1327

-----Original Message-----
From: Sandra Lövenich [mailto:loev...@imsb.biol.ethz.ch]
Sent: Monday, September 28, 2009 2:25 AM
To: Mi-Youn Brusniak
Cc: Ruedi Aebersold
Subject: Tiqam source code access

Mi-Youn

Please find attached what happens when -after correct installation of mysql
database as well as tiqam- I try to load a peptide file (not protein!).
No error message at all.