this is th log file text

[MartinH]

!ENTRY org.eclipse.osgi 4 0 2008-11-11 12:55:43.891
!MESSAGE Application error
!STACK 1
java.lang.NoClassDefFoundError: org/eclipse/osgi/internal/baseadaptor/
BaseClassLoadingHook
at
org.eclipse.core.runtime.internal.adaptor.EclipseClassLoadingHook.findLibrary(EclipseClassLoadingHook.java:
182)
at org.eclipse.osgi.baseadaptor.BaseData.findLibrary(BaseData.java:
122)
at
org.eclipse.osgi.framework.internal.core.BundleLoader.findLocalLibrary(BundleLoader.java:
662)
at
org.eclipse.osgi.framework.internal.core.BundleLoader.findLibrary(BundleLoader.java:
653)
at
org.eclipse.osgi.baseadaptor.loader.ClasspathManager.findLibrary(ClasspathManager.java:
555)
at
org.eclipse.osgi.internal.baseadaptor.DefaultClassLoader.findLibrary(DefaultClassLoader.java:
149)
at java.lang.ClassLoader.loadLibrary(Unknown Source)
at java.lang.Runtime.loadLibrary0(Unknown Source)
at java.lang.System.loadLibrary(Unknown Source)
at org.eclipse.swt.internal.Library.load(Library.java:132)
at org.eclipse.swt.internal.Library.loadLibrary(Library.java:201)
at org.eclipse.swt.internal.Library.loadLibrary(Library.java:151)
at org.eclipse.swt.internal.C.<clinit>(C.java:21)
at org.eclipse.swt.widgets.Display.<clinit>(Display.java:126)
at org.eclipse.ui.internal.Workbench.createDisplay(Workbench.java:
482)
at org.eclipse.ui.PlatformUI.createDisplay(PlatformUI.java:161)
at proteinDigestor.Application.start(Application.java:69)
at
org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:
169)
at
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:
106)
at
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:
76)
at
org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:
363)
at
org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:
176)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:508)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:447)
at org.eclipse.equinox.launcher.Main.run(Main.java:1173)
Caused by: java.lang.ClassNotFoundException:
org.eclipse.osgi.internal.baseadaptor.BaseClassLoadingHook
at java.net.URLClassLoader$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClassInternal(Unknown Source)
... 29 more
Caused by: java.util.zip.ZipException: incomplete literal/length tree
at java.util.zip.InflaterInputStream.read(Unknown Source)
at java.util.jar.JarVerifier$VerifierStream.read(Unknown Source)
at sun.misc.Resource.getBytes(Unknown Source)
at java.net.URLClassLoader.defineClass(Unknown Source)
at java.net.URLClassLoader.access$000(Unknown Source)
... 35 more
Martin

[Mi-Youn Brusniak]

Dear Martin,

Based on the error message (see java.util.zip.ZipException: incomplete
literal/length tree...), the error comes from incomplete or incorrect
decompression of the compressed file *.tgz file.
Incomplete or incorrect decompression cuts off the directories and you will
can runtime error related to "not finding classes".
[For window OS]
Please use the following WinRAR software to decompress the file correctly.
http://www.download.com/WinRAR/3000-2250_4-10007677.html
[For Linux OS]
>tar -xzvf

Cheers,

Mi-Youn

Mi-Youn Brusniak, Ph.D.
Computational Biology
Seattle Proteome Center
mbru...@systemsbiology.org
Tel: (206) 732-1327

[Martin Hubalek]

Dear Mi-Youn,

thanks for your hepl, It works now. WE must have copied the files in some corrupted version.

cheers,

Martin

> ------------ Původní zpráva ------------
> Od: Mi-Youn Brusniak <mbru...@systemsbiology.org>
> Předmět: RE: this is th log file text
> Datum: 11.11.2008 21:51:23
> ----------------------------------------

[MYB]

Dear Eduard,

The subject posted in Nov 11, 2008 (see below) might help you to solve
your problem.

Cheers,

Mi-Youn

---------- Forwarded message ----------
From: "Mi-Youn Brusniak" <mbrusn...@systemsbiology.org>
Date: Nov 11 2008, 1:51 pm
Subject: this is th log file text
To: TIQAM

Dear Martin,

Based on the error message (see java.util.zip.ZipException: incomplete
literal/length tree...), the error comes from incomplete or incorrect
decompression of the compressed file *.tgz file.
Incomplete or incorrect decompression cuts off the directories and you
will
can runtime error related to "not finding classes".
[For window OS]
Please use the followingWinRARsoftware to decompress the file

correctly.http://www.download.com/WinRAR/3000-2250_4-10007677.html
[For Linux OS]

>tar -xzvf

Cheers,

Mi-Youn

Mi-Youn Brusniak, Ph.D.
Computational Biology
Seattle Proteome Center

mbrusn...@systemsbiology.org