TiQAM viewer

[Sri]

Hi all
I have run into a small problem while using the TIQAM viewer. It asks
me for the transition list and the trace file however when I specify
them it gives the following error.

java.lang.RuntimeException: This project already contains an
experiment named test
at org.systemsbiology.aebersoldlab.tiqam.model.Project.addExperiment
(Project.java:148)
at org.systemsbiology.aebersoldlab.tiqam.importdata.ImportTask$1.run
(ImportTask.java:51)
at org.systemsbiology.aebersoldlab.tiqam.importdata.ImportTask$1.run
(ImportTask.java:1)
at
org.systemsbiology.aebersoldlab.core.db.HibernateUtil.runInTransaction
(HibernateUtil.java:535)
at org.systemsbiology.aebersoldlab.tiqam.importdata.ImportTask.run
(ImportTask.java:35)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run
(ModalContext.java:113)


Plugin-ID mrm
version1.2.0

Just wondering if I am using the wrong file format (use TPP) or if my
installation has some problem.

Thanks heaps for help!!
Cheers
SRi

[Sri]

Oops sorry, the actual error message i got is :

java.lang.ArrayIndexOutOfBoundsException: 1
at
org.systemsbiology.aebersoldlab.tiqam.importdata.TransitionFileProcessor.process
(TransitionFileProcessor.java:120)
at
org.systemsbiology.aebersoldlab.tiqam.importdata.TransitionFileProcessor.access
$0(TransitionFileProcessor.java:100)
at
org.systemsbiology.aebersoldlab.tiqam.importdata.TransitionFileProcessor
$1.run(TransitionFileProcessor.java:79)
at
org.systemsbiology.aebersoldlab.core.db.HibernateUtil.runInTransaction
(HibernateUtil.java:461)
at
org.systemsbiology.aebersoldlab.tiqam.importdata.TransitionFileProcessor.process
(TransitionFileProcessor.java:68)
at org.systemsbiology.aebersoldlab.tiqam.importdata.ImportTask.run
(ImportTask.java:75)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run
(ModalContext.java:113)

The one I posted an hour back was when I was trying to replicate the
problem.
Thanks heaps for help!

Cheers
Sri

[Mi-Youn Brusniak]

Hi Sri,

Could you run TIQAM-Viewer with demo data (distributed together with the
code)?
If you can't run the demo data, I recommend you to reinstall and make sure
you can connect the database using Tools >> Preferences and click "Test
Connection".
If you have no problem with demo dataset, you may break down your input
(smaller size of experiment).

Mi-Youn

Mi-Youn Brusniak, Ph.D.
Computational Biology
Seattle Proteome Center
mbru...@systemsbiology.org
Tel: (206) 732-1327