I'm trying to run ThunderSTORM from a macro: I am splitting my raw stack (e.g 20k frames) into time frames (e.g. 4x 5k frames) and then processing these from the macro. This works fine for running the analysis and exporting the results.
However if I try to filter the results after each analysis run, e.g.:
run("Show results table", "action=filter formula=[sigma < 300]");
the filtering works for the first time point, but not after that. Also the "Apply" button is greyed out. I tried this also with Merging and the result is the same - after the 1st run the "Merge" button is greyed out. These buttons then remain greyed out until I restart Fiji (for any subsequent processing, or import of results).
I am not getting any error messages, it just simply seems to ignore the command.
I am using Fiji 1.52j on Ubuntu 18.04, but also tried this on a Windows computer and older Fiji version and had the same problem.
Does anyone know what could be causing this, or a possible workaround?