Counts in mapNH, option All

[Fidel Botero]

Hello everyone,

I'd like to know the order in which are performed and printed the counts of nucleotide substitutions when using the map.type=All option in mapNH.

Thanks in advance !

Fidel 

[Julien Yann Dutheil]

Hi Fidel,

I have updated the output of mapnh to provide info on the mapping details. Now it looks like this:

  * Count type 1.......................: A->C

  * Count type 2.......................: A->G

  * Count type 3.......................: A->U

  * Count type 4.......................: C->A

  * Count type 5.......................: C->G

  * Count type 6.......................: C->U

  * Count type 7.......................: G->A

  * Count type 8.......................: G->C

  * Count type 9.......................: G->U

  * Count type 10......................: U->A

  * Count type 11......................: U->C

  * Count type 12......................: U->G

Output counts of type 1 to file........: Life_Alignment.counts1.dnd

Output counts of type 2 to file........: Life_Alignment.counts2.dnd

Output counts of type 3 to file........: Life_Alignment.counts3.dnd

Output counts of type 4 to file........: Life_Alignment.counts4.dnd

Output counts of type 5 to file........: Life_Alignment.counts5.dnd

Output counts of type 6 to file........: Life_Alignment.counts6.dnd

Output counts of type 7 to file........: Life_Alignment.counts7.dnd

Output counts of type 8 to file........: Life_Alignment.counts8.dnd

Output counts of type 9 to file........: Life_Alignment.counts9.dnd

Output counts of type 10 to file.......: Life_Alignment.counts10.dnd

Output counts of type 11 to file.......: Life_Alignment.counts11.dnd

Output counts of type 12 to file.......: Life_Alignment.counts12.dnd

This should hopefully answer your question and help other users :)

Cheers and sorry again for the delay,

Julien.

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Julien Y. Dutheil, Ph-D
0 (+49) 6421 178 986

§ Max Planck Institute for Terrestrial Microbiology
Department of Organismic Interactions
Marburg -- GERMANY

§ Intitute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE

[Fidel Botero]

Great ! 

Thanks a lot, Julien !