mapNH, types and counts
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Tristan Lefebure
Nov 29, 2012, 11:55:14 AM11/29/12
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Dear all,
Say you run mapNH with:
map.type = DnDs
output.counts.tree.prefix = counts
You end up with two files:
- count1.dnd
- count2.dnd
Which one is for the N and S substitutions?
Thanks!
--
Tristan
Say you run mapNH with:
map.type = DnDs
output.counts.tree.prefix = counts
You end up with two files:
- count1.dnd
- count2.dnd
Which one is for the N and S substitutions?
Thanks!
--
Tristan
Julien Yann Dutheil
Nov 29, 2012, 5:24:20 PM11/29/12
to testnh-h...@googlegroups.com
Hi Tristan,
A good old issue... we really need to document that.1 is synonymous, 2
is nonsynonymous. Please note that making the ratio of the counts is
not directly equivalent to omega, in case you wanted to do that.
J.
> --
>
>
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--
Julien Y. Dutheil, Ph-D
0 (+49) 6421 178 986
§ Max Planck Institute for Terrestrial Microbiology
Department of Organismic Interactions
Marburg -- GERMANY
§ Intitute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE
A good old issue... we really need to document that.1 is synonymous, 2
is nonsynonymous. Please note that making the ratio of the counts is
not directly equivalent to omega, in case you wanted to do that.
J.
>
>
>
--
Julien Y. Dutheil, Ph-D
0 (+49) 6421 178 986
§ Max Planck Institute for Terrestrial Microbiology
Department of Organismic Interactions
Marburg -- GERMANY
§ Intitute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE
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