Hi!
I work with Peter Yoon and am attempting to implement a DALI to Tcoffee workflow.
Tcoffee runs perfectly locally, but upon processing the same files through our server, Tcoffee seems to produce nonASCII characters in the first merge step causing a fatal error when merging the final msa. Our files and scripts are all UTF-8 encoded and the error only appears upon the first Tcoffee call in a singularity container.
A workaround to this is to isolate each merge step and iterate the merging however this scales the processing time by 100x. The characters are printable in ISO-8859-1 Latin 1 encryption. Using a previous version and simply implementing sanitization functions do not fix this issue.
I was wondering if we are surpassing Tcoffee's processing limit like the MAXNPID error of previous models or if there were any encryption logic errors.
Thanks!
Alex