Toggle "wrap around" in FASTA and HTML output

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S. Obermaier

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Aug 11, 2020, 3:22:31 AM8/11/20
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First and foremost: have a very nice day!

Secondly: I very much like the HTML output of t-coffee, except that I would like to see the output without wrapping around every 32 characters. Is there a possibility to set that in t-coffee, or do I have to write a script to modify the output file? Same goes for the FASTA output.

Thanks!
Sebastian

Cedric Notredame

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Aug 11, 2020, 4:43:12 AM8/11/20
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Dear Sebastian

The 32 is a bit annoying and a left over of the time when we used to print these things. I should probably change the default

The following flag -aln_line_length=<value> will solve your issue. It will impact all the output formats

I have just realized it was not properly documented. It will be in the next release.

Cheers,


Cedric

   

Le 11/8/20 à 09:22, S. Obermaier a écrit :
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Obermaier, S.

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Aug 11, 2020, 6:03:07 AM8/11/20
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Thanks! That makes my life so much easier right now.

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