problems installing sara on vagrant

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Barry Kesner

Apr 11, 2020, 7:21:01 AM4/11/20
to,, modoc kesner

I am trying to run sara on OSX(latest).

It looks like your files Vagrantfile and are out of date.

1. The shipped Vagrantfile for percision64 does not get downloaded so I downloaded my own. It looks like your is out of date.
2. is out of date and does not point to the binaries for t-coffee correctly. I tried updating it by hunting for it in
your directory structure and found what I think is*.bin

>my modifications

< tcoffee=`ls*.bin`
> #wget -q -r -l1 --no-parent -A "T-COFFEE_installer*_linux_x64.bin"
> #tcoffee=`ls*.bin`
> #BAK replaced with might try to replace with beta version later
> #
> wget -q -r -l1 --no-parent -A "T-COFFEE_installer*_linux_x64.bin"
> tcoffee=`ls*.bin`

However, after getting a virtual machine, t-coffee and RNAfold did not seem to exist so maybe I took
the wrong binary.

I am in the process of trying to install the dependencies on the VM.
For instance, I did a

sudo apt-get install t-coffee

to get t-coffee.

I am looking to get others also.

Maybe you can fix these problems for me and I won't have to do this.


I have attached my error file when I try to do
vagrant init.
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