Dear T-coffee team,
I would like to run expresso relying only on a set of pdb files that I have (approx. 150), to align a set of ~1200 sequences. I would like to avoid t-coffee trying to fetch
My guess is I need to run expresso (if I don't want to build a template file myself) and:
- Build a file that can be the input to the option -pdb_db from my set of pdb files.
- Input all the pdb files with the -pdb option.
My questions are:
- How should the -pdb_db input look like? Any advice on how to build it?
- Is there a way of inputting all the pdb files at once instead of individually?
Thanks in advance for your help.
Best,
Esteban