Tcoffee

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sjz...@genetics.ac.cn

12/27/22

The website ESPript can't support our Coffee

ESPript ESPript server renders sequence similarities and secondary structure information from aligned

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The website ESPript can't support our Coffee

ESPript ESPript server renders sequence similarities and secondary structure information from aligned

12/27/22

Charlotte Crauwels, Athanasios Baltzis4

12/15/22

pdb_pair/TMalign failed error

Dear Charlotte, Have you tried to copy the pdb and fasta files to your working directory instead of

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pdb_pair/TMalign failed error

Dear Charlotte, Have you tried to copy the pdb and fasta files to your working directory instead of

12/15/22

Esteban López Tavera, … Charlotte Crauwels11

12/9/22

Problem with t-coffee finding local pdb files as templates

Dear Cedric, I'm working on a supercomputer , I can't thus just update the version (now

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Problem with t-coffee finding local pdb files as templates

Dear Cedric, I'm working on a supercomputer , I can't thus just update the version (now

12/9/22

Mann, Carla M, Cedric Notredame2

9/20/22

Errors when using T-coffee to align 1.5 million DNA sequences

Dear Arvin T-Coffee is not really the right tool for this kind of tasks. What you want is more of an

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Errors when using T-coffee to align 1.5 million DNA sequences

Dear Arvin T-Coffee is not really the right tool for this kind of tasks. What you want is more of an

9/20/22

Esteban López Tavera

8/22/22

Problem with installation using binaries

Dear T-coffee team, So far I haven't been able to run t-coffee (expresso) locally. I tried to

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Problem with installation using binaries

Dear T-coffee team, So far I haven't been able to run t-coffee (expresso) locally. I tried to

8/22/22

Esteban López Tavera, Athanasios Baltzis7

8/19/22

Expresso/3Dcoffee with local pdb database

Great, thanks! On Friday, August 19, 2022 at 1:48:03 PM UTC+2 baltzis.a...@gmail.com wrote: Yes,

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Expresso/3Dcoffee with local pdb database

Great, thanks! On Friday, August 19, 2022 at 1:48:03 PM UTC+2 baltzis.a...@gmail.com wrote: Yes,

8/19/22

Eugenia Silva-Herzog

7/27/22

Hello how can I download a pdf with the alignments? Thanks

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Hello how can I download a pdf with the alignments? Thanks

7/27/22

Christian Ahearn

6/15/22

Limit to number of sequences aligned.

Hello tcoffee team, I noticed that the t-coffee espresso program only allows 150 sequences to be

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Limit to number of sequences aligned.

Hello tcoffee team, I noticed that the t-coffee espresso program only allows 150 sequences to be

6/15/22

Filipe Cerqueira

4/14/22

Hello, I clicked on the button to send to ESPript after a successful T-Coffee alignment and am left

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Hello, I clicked on the button to send to ESPript after a successful T-Coffee alignment and am left

4/14/22

Wei Wang, Athanasios Baltzis5

4/7/22

increase local accuracy

I cannot reproduce it using your set-up either. Please try to remove all your tcoffee installations (

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increase local accuracy

I cannot reproduce it using your set-up either. Please try to remove all your tcoffee installations (

4/7/22

Cedric Notredame

3/17/22

Re: TCoffee Newsgroup: 3D-Coffeenot recognising PDB sequences

Dear Liliana, I suspect an issue in your ATOM field., The way it works is that when providing a PDB *

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Re: TCoffee Newsgroup: 3D-Coffeenot recognising PDB sequences

Dear Liliana, I suspect an issue in your ATOM field., The way it works is that when providing a PDB *

3/17/22

David Mathog, … Athanasios Baltzis4

2/24/22

T-coffee expresso configuration question

Hi David, Thank you for reporting this bug. We have pushed a fix on github (https://github.com/cbcrg/

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T-coffee expresso configuration question

Hi David, Thank you for reporting this bug. We have pushed a fix on github (https://github.com/cbcrg/

2/24/22

Amanda Kristine Votvik, … Jose Espinosa-Carrasco3

1/5/22

Problems with expresso

Hi Amanda, Many thanks for reporting. We fixed the issue and the Expresso mode should be working

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Problems with expresso

Hi Amanda, Many thanks for reporting. We fixed the issue and the Expresso mode should be working

1/5/22

Curro Campuzano Jiménez, Athanasios Baltzis2

12/21/21

Error using -mode accurate

Hi Curro, Could you please provide us with the t_coffee version you use, the full log file and your

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Error using -mode accurate

Hi Curro, Could you please provide us with the t_coffee version you use, the full log file and your

12/21/21

Sara at Alignable

11/25/21

Local Businesses in Boydton are waiting

Barry Kesner is still waiting for you to accept your invitation to join Alignable. Hi, This is Sara

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Local Businesses in Boydton are waiting

Barry Kesner is still waiting for you to accept your invitation to join Alignable. Hi, This is Sara

11/25/21

Fares Z. Najar, Ph.D., Jose Espinosa-Carrasco2

9/21/21

Dear Fares, Thanks a lot for reporting your issue! I am afraid that the problem is that your

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Dear Fares, Thanks a lot for reporting your issue! I am afraid that the problem is that your

9/21/21

Barry Kesner via Alignable

8/11/21

Gerking Lori S CPA

It's Barry from None in Newton Highlands. I'd like to be able to refer customers to you, so I

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Gerking Lori S CPA

It's Barry from None in Newton Highlands. I'd like to be able to refer customers to you, so I

8/11/21

Eric Deveaud, Cedric Notredame2

6/18/21

is tcoffe github issue used ?

Hi Eric, This would be the place: https://github.com/cbcrg/tcoffee/issues Cheers, Cedric Le 18/6/21 à

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is tcoffe github issue used ?

Hi Eric, This would be the place: https://github.com/cbcrg/tcoffee/issues Cheers, Cedric Le 18/6/21 à

6/18/21

6/15/21

Get the picture of multiple alignement

Hello I made a multiple alignement and I got a beautiful picture with color. Now I want to get this

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Get the picture of multiple alignement

Hello I made a multiple alignement and I got a beautiful picture with color. Now I want to get this

6/15/21

Eric Deveaud, Athanasios Baltzis2

6/10/21

t_coffe expresso :: ncbiblast bad jpeg output

Hi Eric, I would suggest you update your t_coffee version. The issue with has been fixed since the

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t_coffe expresso :: ncbiblast bad jpeg output

Hi Eric, I would suggest you update your t_coffee version. The issue with has been fixed since the

6/10/21

wailum, Jose Espinosa-Carrasco2

5/31/21

Always iRMSD-APDB Failed

Hi, To Use APDB, your alignment must include at least 2 sequences with a known structure. These

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Always iRMSD-APDB Failed

Hi, To Use APDB, your alignment must include at least 2 sequences with a known structure. These

5/31/21

4/7/21

Hi I'm unable to run the MSA alignment using threads/core option ? after passing the cores/

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Hi I'm unable to run the MSA alignment using threads/core option ? after passing the cores/

4/7/21

Altuntas, Levent, Chang Jia-Ming2

3/13/21

Dear Levent, Altuntas, Levent <levent....@rwth-aachen.de> 於 2021年3月12日週五下午6:58寫道： Hi

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Dear Levent, Altuntas, Levent <levent....@rwth-aachen.de> 於 2021年3月12日週五下午6:58寫道： Hi

3/13/21

Vladimir Saudek

3/5/21

T-Coffee server error 500 [7i248i164]

Hi, Did you stop supporting Protogen in your T-coffe suite? I am receiving an error message: http://

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T-Coffee server error 500 [7i248i164]

Hi, Did you stop supporting Protogen in your T-coffe suite? I am receiving an error message: http://

3/5/21

Qussai Zuriegat

1/12/21

what software do I need to show my result after doing sequence alignment on your website ?

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what software do I need to show my result after doing sequence alignment on your website ?

1/12/21

Ibrahim Chegrane

11/20/20

Tcoffee and "Segment-based multiple sequence alignment"

Hello, I am ibrahim chegrane, postdoctoral researcher at bio-informatics lab in Sherbrooke University

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Tcoffee and "Segment-based multiple sequence alignment"

Hello, I am ibrahim chegrane, postdoctoral researcher at bio-informatics lab in Sherbrooke University

11/20/20

Mehrdad Zandigohar, Jose Espinosa-Carrasco2

11/3/20

iRMSD-APDB failed

Dear Mehrdad, Thanks a lot for reporting this issue! We have solved the problem and you should be

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iRMSD-APDB failed

Dear Mehrdad, Thanks a lot for reporting this issue! We have solved the problem and you should be

11/3/20

HOUSTON Douglas, Cedric Notredame2

10/20/20

MCOFFEE results page

Dear Doug, Thanks for your query. I realize we never properly documented the graphic rendering of the

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MCOFFEE results page

Dear Doug, Thanks for your query. I realize we never properly documented the graphic rendering of the

10/20/20

9/25/20

merge k multiple sequence alignments using tcoffee -profile

Hi, I'm currently trying to merge 3 or more alignments using the command : t_coffee -profile

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merge k multiple sequence alignments using tcoffee -profile

Hi, I'm currently trying to merge 3 or more alignments using the command : t_coffee -profile

9/25/20

9/11/20

Hi, I'm trying to align two sequences, where the first aligns perfectly to the end of the second.

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Hi, I'm trying to align two sequences, where the first aligns perfectly to the end of the second.

9/11/20

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