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Tcoffee
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Böhm, Cornelia
, …
Jose Espinosa-Carrasco
3
4:53 AM
Expresso problem
Dear Cornelia, Thanks for reporting. There has been a migration in the server that computes the jobs
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Expresso problem
Dear Cornelia, Thanks for reporting. There has been a migration in the server that computes the jobs
4:53 AM
sjz...@genetics.ac.cn
12/27/22
The website ESPript can't support our Coffee
ESPript ESPript server renders sequence similarities and secondary structure information from aligned
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The website ESPript can't support our Coffee
ESPript ESPript server renders sequence similarities and secondary structure information from aligned
12/27/22
Charlotte Crauwels
,
Athanasios Baltzis
4
12/15/22
pdb_pair/TMalign failed error
Dear Charlotte, Have you tried to copy the pdb and fasta files to your working directory instead of
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pdb_pair/TMalign failed error
Dear Charlotte, Have you tried to copy the pdb and fasta files to your working directory instead of
12/15/22
Esteban López Tavera
, …
Charlotte Crauwels
11
12/9/22
Problem with t-coffee finding local pdb files as templates
Dear Cedric, I'm working on a supercomputer , I can't thus just update the version (now
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Problem with t-coffee finding local pdb files as templates
Dear Cedric, I'm working on a supercomputer , I can't thus just update the version (now
12/9/22
Mann, Carla M
,
Cedric Notredame
2
9/20/22
Errors when using T-coffee to align 1.5 million DNA sequences
Dear Arvin T-Coffee is not really the right tool for this kind of tasks. What you want is more of an
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Errors when using T-coffee to align 1.5 million DNA sequences
Dear Arvin T-Coffee is not really the right tool for this kind of tasks. What you want is more of an
9/20/22
Esteban López Tavera
8/22/22
Problem with installation using binaries
Dear T-coffee team, So far I haven't been able to run t-coffee (expresso) locally. I tried to
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Problem with installation using binaries
Dear T-coffee team, So far I haven't been able to run t-coffee (expresso) locally. I tried to
8/22/22
Esteban López Tavera
,
Athanasios Baltzis
7
8/19/22
Expresso/3Dcoffee with local pdb database
Great, thanks! On Friday, August 19, 2022 at 1:48:03 PM UTC+2 baltzis.a...@gmail.com wrote: Yes,
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Expresso/3Dcoffee with local pdb database
Great, thanks! On Friday, August 19, 2022 at 1:48:03 PM UTC+2 baltzis.a...@gmail.com wrote: Yes,
8/19/22
Eugenia Silva-Herzog
7/27/22
tcoffe view
Hello how can I download a pdf with the alignments? Thanks
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tcoffe view
Hello how can I download a pdf with the alignments? Thanks
7/27/22
Christian Ahearn
6/15/22
Limit to number of sequences aligned.
Hello tcoffee team, I noticed that the t-coffee espresso program only allows 150 sequences to be
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Limit to number of sequences aligned.
Hello tcoffee team, I noticed that the t-coffee espresso program only allows 150 sequences to be
6/15/22
Filipe Cerqueira
4/14/22
ESPript
Hello, I clicked on the button to send to ESPript after a successful T-Coffee alignment and am left
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ESPript
Hello, I clicked on the button to send to ESPript after a successful T-Coffee alignment and am left
4/14/22
Wei Wang
,
Athanasios Baltzis
5
4/7/22
increase local accuracy
I cannot reproduce it using your set-up either. Please try to remove all your tcoffee installations (
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increase local accuracy
I cannot reproduce it using your set-up either. Please try to remove all your tcoffee installations (
4/7/22
Cedric Notredame
3/17/22
Re: TCoffee Newsgroup: 3D-Coffeenot recognising PDB sequences
Dear Liliana, I suspect an issue in your ATOM field., The way it works is that when providing a PDB *
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Re: TCoffee Newsgroup: 3D-Coffeenot recognising PDB sequences
Dear Liliana, I suspect an issue in your ATOM field., The way it works is that when providing a PDB *
3/17/22
David Mathog
, …
Athanasios Baltzis
4
2/24/22
T-coffee expresso configuration question
Hi David, Thank you for reporting this bug. We have pushed a fix on github (https://github.com/cbcrg/
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T-coffee expresso configuration question
Hi David, Thank you for reporting this bug. We have pushed a fix on github (https://github.com/cbcrg/
2/24/22
Amanda Kristine Votvik
, …
Jose Espinosa-Carrasco
3
1/5/22
Problems with expresso
Hi Amanda, Many thanks for reporting. We fixed the issue and the Expresso mode should be working
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Problems with expresso
Hi Amanda, Many thanks for reporting. We fixed the issue and the Expresso mode should be working
1/5/22
Curro Campuzano Jiménez
,
Athanasios Baltzis
2
12/21/21
Error using -mode accurate
Hi Curro, Could you please provide us with the t_coffee version you use, the full log file and your
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Error using -mode accurate
Hi Curro, Could you please provide us with the t_coffee version you use, the full log file and your
12/21/21
Sara at Alignable
11/25/21
Local Businesses in Boydton are waiting
Barry Kesner is still waiting for you to accept your invitation to join Alignable. Hi, This is Sara
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Local Businesses in Boydton are waiting
Barry Kesner is still waiting for you to accept your invitation to join Alignable. Hi, This is Sara
11/25/21
Fares Z. Najar, Ph.D.
,
Jose Espinosa-Carrasco
2
9/21/21
Error
Dear Fares, Thanks a lot for reporting your issue! I am afraid that the problem is that your
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Error
Dear Fares, Thanks a lot for reporting your issue! I am afraid that the problem is that your
9/21/21
Barry Kesner via Alignable
8/11/21
Gerking Lori S CPA
It's Barry from None in Newton Highlands. I'd like to be able to refer customers to you, so I
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Gerking Lori S CPA
It's Barry from None in Newton Highlands. I'd like to be able to refer customers to you, so I
8/11/21
Eric Deveaud
,
Cedric Notredame
2
6/18/21
is tcoffe github issue used ?
Hi Eric, This would be the place: https://github.com/cbcrg/tcoffee/issues Cheers, Cedric Le 18/6/21 à
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is tcoffe github issue used ?
Hi Eric, This would be the place: https://github.com/cbcrg/tcoffee/issues Cheers, Cedric Le 18/6/21 à
6/18/21
Denis Dacheux
6/15/21
Get the picture of multiple alignement
Hello I made a multiple alignement and I got a beautiful picture with color. Now I want to get this
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Get the picture of multiple alignement
Hello I made a multiple alignement and I got a beautiful picture with color. Now I want to get this
6/15/21
Eric Deveaud
,
Athanasios Baltzis
2
6/10/21
t_coffe expresso :: ncbiblast bad jpeg output
Hi Eric, I would suggest you update your t_coffee version. The issue with has been fixed since the
unread,
t_coffe expresso :: ncbiblast bad jpeg output
Hi Eric, I would suggest you update your t_coffee version. The issue with has been fixed since the
6/10/21
wailum
,
Jose Espinosa-Carrasco
2
5/31/21
Always iRMSD-APDB Failed
Hi, To Use APDB, your alignment must include at least 2 sequences with a known structure. These
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Always iRMSD-APDB Failed
Hi, To Use APDB, your alignment must include at least 2 sequences with a known structure. These
5/31/21
sunny kevin
4/7/21
T Coffee
Hi I'm unable to run the MSA alignment using threads/core option ? after passing the cores/
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T Coffee
Hi I'm unable to run the MSA alignment using threads/core option ? after passing the cores/
4/7/21
Altuntas, Levent
,
Chang Jia-Ming
2
3/13/21
AVG
Dear Levent, Altuntas, Levent <levent....@rwth-aachen.de> 於 2021年3月12日 週五 下午6:58寫道: Hi
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AVG
Dear Levent, Altuntas, Levent <levent....@rwth-aachen.de> 於 2021年3月12日 週五 下午6:58寫道: Hi
3/13/21
Vladimir Saudek
3/5/21
T-Coffee server error 500 [7i248i164]
Hi, Did you stop supporting Protogen in your T-coffe suite? I am receiving an error message: http://
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T-Coffee server error 500 [7i248i164]
Hi, Did you stop supporting Protogen in your T-coffe suite? I am receiving an error message: http://
3/5/21
Qussai Zuriegat
1/12/21
what software do I need to show my result after doing sequence alignment on your website ?
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what software do I need to show my result after doing sequence alignment on your website ?
1/12/21
Ibrahim Chegrane
11/20/20
Tcoffee and "Segment-based multiple sequence alignment"
Hello, I am ibrahim chegrane, postdoctoral researcher at bio-informatics lab in Sherbrooke University
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Tcoffee and "Segment-based multiple sequence alignment"
Hello, I am ibrahim chegrane, postdoctoral researcher at bio-informatics lab in Sherbrooke University
11/20/20
Mehrdad Zandigohar
,
Jose Espinosa-Carrasco
2
11/3/20
iRMSD-APDB failed
Dear Mehrdad, Thanks a lot for reporting this issue! We have solved the problem and you should be
unread,
iRMSD-APDB failed
Dear Mehrdad, Thanks a lot for reporting this issue! We have solved the problem and you should be
11/3/20
HOUSTON Douglas
,
Cedric Notredame
2
10/20/20
MCOFFEE results page
Dear Doug, Thanks for your query. I realize we never properly documented the graphic rendering of the
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MCOFFEE results page
Dear Doug, Thanks for your query. I realize we never properly documented the graphic rendering of the
10/20/20
Paul Zaharias
9/25/20
merge k multiple sequence alignments using tcoffee -profile
Hi, I'm currently trying to merge 3 or more alignments using the command : t_coffee -profile
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merge k multiple sequence alignments using tcoffee -profile
Hi, I'm currently trying to merge 3 or more alignments using the command : t_coffee -profile
9/25/20