Tcoffee

1–30 of 213

0 selected

Böhm, Cornelia, … Jose Espinosa-Carrasco3

4:53 AM

Expresso problem

Dear Cornelia, Thanks for reporting. There has been a migration in the server that computes the jobs

unread,

Expresso problem

Dear Cornelia, Thanks for reporting. There has been a migration in the server that computes the jobs

4:53 AM

sjz...@genetics.ac.cn

12/27/22

The website ESPript can't support our Coffee

ESPript ESPript server renders sequence similarities and secondary structure information from aligned

unread,

The website ESPript can't support our Coffee

ESPript ESPript server renders sequence similarities and secondary structure information from aligned

12/27/22

Charlotte Crauwels, Athanasios Baltzis4

12/15/22

pdb_pair/TMalign failed error

Dear Charlotte, Have you tried to copy the pdb and fasta files to your working directory instead of

unread,

pdb_pair/TMalign failed error

Dear Charlotte, Have you tried to copy the pdb and fasta files to your working directory instead of

12/15/22

Esteban López Tavera, … Charlotte Crauwels11

12/9/22

Problem with t-coffee finding local pdb files as templates

Dear Cedric, I'm working on a supercomputer , I can't thus just update the version (now

unread,

Problem with t-coffee finding local pdb files as templates

Dear Cedric, I'm working on a supercomputer , I can't thus just update the version (now

12/9/22

Mann, Carla M, Cedric Notredame2

9/20/22

Errors when using T-coffee to align 1.5 million DNA sequences

Dear Arvin T-Coffee is not really the right tool for this kind of tasks. What you want is more of an

unread,

Errors when using T-coffee to align 1.5 million DNA sequences

Dear Arvin T-Coffee is not really the right tool for this kind of tasks. What you want is more of an

9/20/22

Esteban López Tavera

8/22/22

Problem with installation using binaries

Dear T-coffee team, So far I haven't been able to run t-coffee (expresso) locally. I tried to

unread,

Problem with installation using binaries

Dear T-coffee team, So far I haven't been able to run t-coffee (expresso) locally. I tried to

8/22/22

Esteban López Tavera, Athanasios Baltzis7

8/19/22

Expresso/3Dcoffee with local pdb database

Great, thanks! On Friday, August 19, 2022 at 1:48:03 PM UTC+2 baltzis.a...@gmail.com wrote: Yes,

unread,

Expresso/3Dcoffee with local pdb database

Great, thanks! On Friday, August 19, 2022 at 1:48:03 PM UTC+2 baltzis.a...@gmail.com wrote: Yes,

8/19/22

Eugenia Silva-Herzog

7/27/22

Hello how can I download a pdf with the alignments? Thanks

unread,

Hello how can I download a pdf with the alignments? Thanks

7/27/22

Christian Ahearn

6/15/22

Limit to number of sequences aligned.

Hello tcoffee team, I noticed that the t-coffee espresso program only allows 150 sequences to be

unread,

Limit to number of sequences aligned.

Hello tcoffee team, I noticed that the t-coffee espresso program only allows 150 sequences to be

6/15/22

Filipe Cerqueira

4/14/22

Hello, I clicked on the button to send to ESPript after a successful T-Coffee alignment and am left

unread,

Hello, I clicked on the button to send to ESPript after a successful T-Coffee alignment and am left

4/14/22

Wei Wang, Athanasios Baltzis5

4/7/22

increase local accuracy

I cannot reproduce it using your set-up either. Please try to remove all your tcoffee installations (

unread,

increase local accuracy

I cannot reproduce it using your set-up either. Please try to remove all your tcoffee installations (

4/7/22

Cedric Notredame

3/17/22

Re: TCoffee Newsgroup: 3D-Coffeenot recognising PDB sequences

Dear Liliana, I suspect an issue in your ATOM field., The way it works is that when providing a PDB *

unread,

Re: TCoffee Newsgroup: 3D-Coffeenot recognising PDB sequences

Dear Liliana, I suspect an issue in your ATOM field., The way it works is that when providing a PDB *

3/17/22

David Mathog, … Athanasios Baltzis4

2/24/22

T-coffee expresso configuration question

Hi David, Thank you for reporting this bug. We have pushed a fix on github (https://github.com/cbcrg/

unread,

T-coffee expresso configuration question

Hi David, Thank you for reporting this bug. We have pushed a fix on github (https://github.com/cbcrg/

2/24/22

Amanda Kristine Votvik, … Jose Espinosa-Carrasco3

1/5/22

Problems with expresso

Hi Amanda, Many thanks for reporting. We fixed the issue and the Expresso mode should be working

unread,

Problems with expresso

Hi Amanda, Many thanks for reporting. We fixed the issue and the Expresso mode should be working

1/5/22

Curro Campuzano Jiménez, Athanasios Baltzis2

12/21/21

Error using -mode accurate

Hi Curro, Could you please provide us with the t_coffee version you use, the full log file and your

unread,

Error using -mode accurate

Hi Curro, Could you please provide us with the t_coffee version you use, the full log file and your

12/21/21

Sara at Alignable

11/25/21

Local Businesses in Boydton are waiting

Barry Kesner is still waiting for you to accept your invitation to join Alignable. Hi, This is Sara

unread,

Local Businesses in Boydton are waiting

Barry Kesner is still waiting for you to accept your invitation to join Alignable. Hi, This is Sara

11/25/21

Fares Z. Najar, Ph.D., Jose Espinosa-Carrasco2

9/21/21

Dear Fares, Thanks a lot for reporting your issue! I am afraid that the problem is that your

unread,

Dear Fares, Thanks a lot for reporting your issue! I am afraid that the problem is that your

9/21/21

Barry Kesner via Alignable

8/11/21

Gerking Lori S CPA

It's Barry from None in Newton Highlands. I'd like to be able to refer customers to you, so I

unread,

Gerking Lori S CPA

It's Barry from None in Newton Highlands. I'd like to be able to refer customers to you, so I

8/11/21

Eric Deveaud, Cedric Notredame2

6/18/21

is tcoffe github issue used ?

Hi Eric, This would be the place: https://github.com/cbcrg/tcoffee/issues Cheers, Cedric Le 18/6/21 à

unread,

is tcoffe github issue used ?

Hi Eric, This would be the place: https://github.com/cbcrg/tcoffee/issues Cheers, Cedric Le 18/6/21 à

6/18/21

6/15/21

Get the picture of multiple alignement

Hello I made a multiple alignement and I got a beautiful picture with color. Now I want to get this

unread,

Get the picture of multiple alignement

Hello I made a multiple alignement and I got a beautiful picture with color. Now I want to get this

6/15/21

Eric Deveaud, Athanasios Baltzis2

6/10/21

t_coffe expresso :: ncbiblast bad jpeg output

Hi Eric, I would suggest you update your t_coffee version. The issue with has been fixed since the

unread,

t_coffe expresso :: ncbiblast bad jpeg output

Hi Eric, I would suggest you update your t_coffee version. The issue with has been fixed since the

6/10/21

wailum, Jose Espinosa-Carrasco2

5/31/21

Always iRMSD-APDB Failed

Hi, To Use APDB, your alignment must include at least 2 sequences with a known structure. These

unread,

Always iRMSD-APDB Failed

Hi, To Use APDB, your alignment must include at least 2 sequences with a known structure. These

5/31/21

4/7/21

Hi I'm unable to run the MSA alignment using threads/core option ? after passing the cores/

unread,

Hi I'm unable to run the MSA alignment using threads/core option ? after passing the cores/

4/7/21

Altuntas, Levent, Chang Jia-Ming2

3/13/21

Dear Levent, Altuntas, Levent <levent....@rwth-aachen.de> 於 2021年3月12日週五下午6:58寫道： Hi

unread,

Dear Levent, Altuntas, Levent <levent....@rwth-aachen.de> 於 2021年3月12日週五下午6:58寫道： Hi

3/13/21

Vladimir Saudek

3/5/21

T-Coffee server error 500 [7i248i164]

Hi, Did you stop supporting Protogen in your T-coffe suite? I am receiving an error message: http://

unread,

T-Coffee server error 500 [7i248i164]

Hi, Did you stop supporting Protogen in your T-coffe suite? I am receiving an error message: http://

3/5/21

Qussai Zuriegat

1/12/21

what software do I need to show my result after doing sequence alignment on your website ?

unread,

what software do I need to show my result after doing sequence alignment on your website ?

1/12/21

Ibrahim Chegrane

11/20/20

Tcoffee and "Segment-based multiple sequence alignment"

Hello, I am ibrahim chegrane, postdoctoral researcher at bio-informatics lab in Sherbrooke University

unread,

Tcoffee and "Segment-based multiple sequence alignment"

Hello, I am ibrahim chegrane, postdoctoral researcher at bio-informatics lab in Sherbrooke University

11/20/20

Mehrdad Zandigohar, Jose Espinosa-Carrasco2

11/3/20

iRMSD-APDB failed

Dear Mehrdad, Thanks a lot for reporting this issue! We have solved the problem and you should be

unread,

iRMSD-APDB failed

Dear Mehrdad, Thanks a lot for reporting this issue! We have solved the problem and you should be

11/3/20

HOUSTON Douglas, Cedric Notredame2

10/20/20

MCOFFEE results page

Dear Doug, Thanks for your query. I realize we never properly documented the graphic rendering of the

unread,

MCOFFEE results page

Dear Doug, Thanks for your query. I realize we never properly documented the graphic rendering of the

10/20/20

9/25/20

merge k multiple sequence alignments using tcoffee -profile

Hi, I'm currently trying to merge 3 or more alignments using the command : t_coffee -profile

unread,

merge k multiple sequence alignments using tcoffee -profile

Hi, I'm currently trying to merge 3 or more alignments using the command : t_coffee -profile

9/25/20

Search

Clear search

Close search

Google apps

Main menu