Facing trouble shooting during synteny analysis

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Zeeshan Ghulam nabi

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Nov 25, 2023, 3:46:14 AM11/25/23

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Hello, I hope everyone is doing well. i have downloaded the TB tool and I want to check for collinearity relationships B/T specific genes positions in two genomes. first, i downloaded the chromosemes of two species and their Gff3 files. then, i uploaded them in the One-step McScanX setup, which i had already installed. after that, i issued a commad to my tb tool McScanX file folder, and the process started, but its running very slowly. it has been running for two weeks on my laptop. could you please advise if i am making mistake or if there is something should i do differently and my PC is new 16 RAM

Thanks

MOHAMMED AHMED

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Jan 25, 2024, 8:27:55 AM1/25/24

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Hi Zeeshan,

How many cpus did you set for "CPU for BlastP"? I assume you have local installation of ncbi-blast.