Position list failing to export as table

[Lexi Heger]

Hi!
I am trying to export a position list generated from vcf file into a table format instead of the position list format (json). I have done this six months prior, but today when I tried to do this I ran into an error (see screenshot). I have tried to update my java, then reinstalled java8 to see if that helped. The file begins creation as .txt but only has the headers. I have viewed the position list output in TASSEL and it looks normal but it still fails to convert to .txt
Thanks for your time. 

[Brandon Monier]

Hi,

If you can export to JSON, can you ensure that you have consistent fields across each entry? JSON and Table export handle "null" conditions differently on the code side. Additionally, looking at the logging information may give us more insight. In the GUI, you can access this through "Help > Logging" and also ensure that the "Debug Level" box is checked.

Best,

Brandon M.

[Lexi Heger]

Hi Brandon,

Sorry for the delay. Attached is the log although it doesn't seem like the output from that includes that saving/export. And the json export doesn't have the site name (why I am writing because I needed the site name), it. converts chr to chr:name instead. 

{
    "PositionList":[
        {
            "chr":{
                "name":"1"
            },
            "position":28955,
            "strand":"+",
            "anno":{
                "AC":"330",
                "MQ":"60",
                "VDB":"0",
                "DP4":"0,0,330,0",
                "DP":"330",
                "AN":"330",
                "VARIANT":"C/T",
                "MQ0F":"0",
                "SGB":"-59.5449"
            }
        },

Thanks,

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