Explained variance of PC from MDS

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Antonio Monforte

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Nov 18, 2020, 7:37:12 AM11/18/20
to TASSEL - Trait Analysis by Association, Evolution and Linkage
Dear all
I have been using extensively MDS. However, I do not know how to find or calculate the % to the variance explained by each PC, as it can see with the PCA.
I would really appreciate any hint on this.
All the best
Antonio

Peter Bradbury

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Nov 18, 2020, 8:23:04 AM11/18/20
to TASSEL - Trait Analysis by Association, Evolution and Linkage
The short answer is that you cannot get percent variance explained from MDS. While MDS is similar to PCA, it is different enough that the eigenvalues cannot be interpreted in the same way.

Peter

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