add bootstrap values on phylogenetic tree in Tassel

[Denis]

Hi there,

I use Tassel version 5.2.18 to make NJ phylogenetic tree on hapmap input file. I'm curious, can i add bootstrap values on those tree in Tassel or i have to use an external software for that?

Thank you in advance,

Regards,

Denis

[Tony Travis]

On 02/02/16 10:16, Denis wrote:
> Hi there,
>
> I use Tassel version 5.2.18 to make NJ phylogenetic tree on hapmap input
> file. I'm curious, can i add bootstrap values on those tree in Tassel or
> i have to use an external software for that?

Hi, Denis.

I asked the same question here a while ago and the answer was to use
external software - I used "TreeBeST":

http://treesoft.sourceforge.net/treebest.shtml

HTH,

Tony.

--
Dr. A.J.Travis, University of Aberdeen, Institute of Biological and
Environmental Sciences, Cruickshank Building, St. Machar Drive, Aberdeen
AB24 3UU, Scotland, UK. tel +44(0)1224 272700, fax +44 (0)1224 272 396
http://www.abdn.ac.uk, mailto:tony....@abdn.ac.uk, skype:ajtravis


The University of Aberdeen is a charity registered in Scotland, No SC013683.
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[Denis]

Hi Tony,

Thank you for your response. Besides of "TreeBeST"  you recomended me i'm also considering the "SNPhylo" software.

Thank you again,

Regards,

Denis

вторник, 2 февраля 2016 г., 13:53:32 UTC+3 пользователь Tony Travis написал:

[Tony Travis]

On 03/02/16 16:30, Denis wrote:
> Hi Tony,
>
> Thank you for your response. Besides of "TreeBeST" you recomended me
> i'm also considering the "SNPhylo" software.

Hi, Denis.

I looked at "SNPhylo" - I thought it was quite interesting, but a lot
more complicated to use than "TreeBeST". I also tried using "RaxML", on
simple concatenations of SNP's as 'alignments', but had severe problems
with the ascertainment bias correction causing core-dumps and gave up!

I'd be interested to know how you get on with "SNPhylo"/

Bye,