Error Parsing Line/ BuilderFromHapMap: SNP Named: ... has too few values

[Runch Tuntipaiboontana]

Dear TASSEL forum,

I am attempting to ultimately convert my genotype data into VCF file format. I've arranged my data into the HapMap format and saved as text file with HapMap extension and tried to open it in TASSEL as HapMap file; however an error message below keeps coming up.

"Error Parsing Line: .....

BuilderForHapMap: SNP Named: ... has too few values"

I have tried both "Open As" HapMap and "Sort Genotype File" with HapMap output; however the error remains.

Kindly let me know what could be the cause of the error. I'm not certain if the cause could be that my file contain missing data, which I entered as NA.

Thank you

Runch

[Terry Casstevens]

This probably a formatting problem with spaces instead of tabs.

Please follow these instructions to get more information.

https://bitbucket.org/tasseladmin/tassel-5-source/wiki/docs/ReportingTassel5Issues.pdf

Best,

Terry

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