Converting Excel Genotype data to Vcf or Hapmap

[Akani Hlungwana]

Dear TASSEL Community,
I hope you are all well,
I currently have a genotype SNP dataset in Excel format, as shown in the attached picture. I would like to kindly ask for guidance on how to convert the dataset into either VCF or HapMap format for downstream analysis in TASSEL and GWAS studies.

Any guidance, examples, or recommended scripts/software would be greatly appreciated.
Thank you very much for your assistance and support.

[Terry Casstevens]

https://bitbucket.org/tasseladmin/tassel-5-source/wiki/UserManual/Load/Load

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