Exporting SNP data to Hapmap or VCF from command line in TASSEL 5
Tom Swifty
Lynn Carol Johnson
Tom –
Run the Production Pipeline after Discovery to extract a VCF or HDF5 file.
Lynn
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Tom Swifty
On Thursday, June 13, 2019 at 6:38:43 AM UTC-4, Lynn Johnson wrote:
Tom –
Run the Production Pipeline after Discovery to extract a VCF or HDF5 file.
Lynn
From: <tas...@googlegroups.com> on behalf of Tom Swifty <anon...@gmail.com>
Reply-To: "tas...@googlegroups.com" <tas...@googlegroups.com>
Date: Wednesday, June 12, 2019 at 3:27 PM
To: "TASSEL - Trait Analysis by Association, Evolution and Linkage" <tas...@googlegroups.com>
Subject: [TASSEL-Group] Exporting SNP data to Hapmap or VCF from command line in TASSEL 5
We are adjusting to TASSEL 5 and trying to determine how at the end of a discovery pipeline run to extract the hapmap or VCF data fro the database. I'm having trouble finding any reference to this in the documentation. Thanks if you can point us in the right direction.
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