Re: [TASSEL-Group] Tassel can't open file after VCF to Hapmap conversion

[Terry Casstevens]

This means that SNP S02_64358 in your file has less genotype values
than you have taxa in the header

On Thu, Mar 17, 2022 at 6:39 PM Clara Cruet <clara...@gmail.com> wrote:
>
> Hello,
>
> I have been getting this error:
>
> Problem loading file… Error: java.lang.IllegalStateException: BuilderFromHapMao: Error Parsing Line: S02_64358 A/G 02 64358 + … BuilderFromHapMap: SNP named S02_64358 has too few values
>
> after the file is converted to hapmap from VCF. I can open it without any problem in VCF format both in the command line and GUI version. However when they are converted to hapmap, Tassel can no longer open them showing that error. I'm getting the error for all chromosomes in the first SNP.
>
>
> Thanks,
>
> Clara
>
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