Importing vcf file

[Tabinda Shahid]

Hi,

I am unable to import my vcf file into tassel and keeps on giving me the pop up that says "the genotype is coded wrong, use 1 or 2 letters per genotype. or first site has incorrect number of values". I don't know how to by pass this.

[Terry Casstevens]

Maybe you could send me part of your file?

On Tue, Feb 14, 2023 at 6:23 PM Tabinda Shahid <tabinda....@gmail.com> wrote:

Hi,

I am unable to import my vcf file into tassel and keeps on giving me the pop up that says "the genotype is coded wrong, use 1 or 2 letters per genotype. or first site has incorrect number of values". I don't know how to by pass this.

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[massub....@gmail.com]

Were you able to solve this problem?

I am having the same issue when I try to sort the file it gives me an error too: "ArrayIndexOutofBoundsException:-1". 
I am trying to load .hmp.txt file.

Thanks in advance.

[Terry Casstevens]

Please follow these instructions to get more information.

https://bitbucket.org/tasseladmin/tassel-5-source/wiki/docs/ReportingTassel5Issues.pdf

Best,

Terry

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