Fields meaning in HapMap.hmc.txt file from UNEAK pipeline in Tassel 3.0

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Denis

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Aug 7, 2019, 5:51:29 PM8/7/19

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Hi,

I'm wondering where i may find description for all fields in HapMap.hmc.txt file from UNEAK pipeline. I need to calculate depth of coverage (DP) and allele depth (AD) to use these for VCF file filtration. Is there any plugin in Tassel to filter out variants in resulted VCF file based on DP and AD values?

Regards,

Denis

marianf...@gmail.com

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Oct 10, 2023, 2:21:59 PM10/10/23

to TASSEL - Trait Analysis by Association, Evolution and Linkage

Hi Denis! do you solve this problem? Because I have the same problem. I run my data with UNEAK 3 years ago and now I need to calculate depth of coverage (DP). I´m trying to rerun my data with Tassel3.0 Standalone but I can´t . Do you have any advice?

Best

Mariana

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