Error in obtaining manhatan Plot. Continue

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Ivan Schuster

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Mar 2, 2017, 8:04:20 AM3/2/17
to TASSEL - Trait Analysis by Association, Evolution and Linkage

Hi.

I am running a MLM analysis in a set of data containing almost 10,000 markers and 384 individuals. I am successful in obtaining the statistics, but when I try to build the Manhattan Plot  graphic, I am noticed it was “Unable to create Manhattan plot java.lang.ArrayIndexOutOfBoundsException: 23”. I am using Tassel 5.2.34 (refreshed today, March, 2, 2017). I am also successful in running Manhattan plot with other data sets (with less markers). What can I do to build the Manhattan plot with my data?

Terry Casstevens

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Mar 2, 2017, 9:01:12 AM3/2/17
to Tassel User Group
Please follow these instructions to get more information.

https://bitbucket.org/tasseladmin/tassel-5-source/wiki/docs/ReportingTassel5Issues.pdf

Best,

Terry
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