Setting indels as unknown

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Neha Chakrawarti

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Feb 13, 2025, 9:04:28 AMFeb 13

to TASSEL - Trait Analysis by Association, Evolution and Linkage

Hi,

Can anyone let me know that how to set indels as unknown in tasselpipeline.

Terry Casstevens

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Feb 13, 2025, 9:20:29 AMFeb 13

to tas...@googlegroups.com

./run_pipeline.pl -Xmx10g -importGuess
TASSELTutorialData/data/mdp_genotype.hmp.txt -IndelsToUnknownPlugin
-endPlugin -export output.vcf -exportType VCF

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