Sounds good.
A couple more comments on convergin though
Converging these systems can be a pain.
Sometimes it is best to develop simple models of the system to compare against or divide the system into small portions that can be verified against something known. Also, if you use iDesign it is a good idea to look at the scalars it comes up with to verify the they are good. IDesign is a dumb process and can potentially create values that don't make sense.
I have not created a gas generator in T-MATS, but both methods you show look like they should work, however there are a couple of things you should look out for. When using the nozzle with low pressure ratios you can potentially get a "backflow" situation where the solver will attempt to push the input pressure lower than ambient (this will typically lead to a crash). Second, T-MATS does not have a free turbine example, so (if you are using the T-MATS map for the free turbine) it may not be the correct form. Of course this shouldn't have any effect when using iDesign and running to the design point.
It is also useful to look at where you are in the maps to verify you are where you think you are. I have attached a .m file that can be used to generate plot the maps easily.
Convergence is also affected by the solver itself, changing the perturbation size (usually smaller ~ 0.01) or changing the dx (usually smaller around 1) can sometimes help. Additionally the convergence criteria should be set very low (esspecially when running idesign), it is not a bad idea to see the errors at 10^-8 or so (this can be especially true with Ndot where even a small error can create a drift situation during convergence). I think the default is 0.1 which is way too high, can set this in the order of 0.00000001.
GL
-Jeff