Re: Regards to BioHeatMap legend

[Ryan Bressler]

It looks like some of our documentation links were broken by a change to google groups...Untill we have time to relocate them the page you found in svn should provide examples and http://systemsbiology-visualizations.googlecode.com/svn/trunk/src/main/docs/bioheatmap.html has documentation/usage.

You can also check out the flash/action script version which has similar usage but more options and works in more browsers but doesn't handle very large (>6000) data sets as well:

http://systemsbiology-visualizations.googlecode.com/svn/trunk/src/main/docs/bioheatmap.html

I should also say that all of these projects were developed for internal usage and as technology demos and, though they are fairly stable, we only update and support them when need and time allow it.

Ryan

 

On Tue, Nov 30, 2010 at 9:40 AM, Fengyuan Hu <fengyu...@gmail.com> wrote:

Hi Ryan,

I think I've figured out most of how it works from example 2 and 4 (from http://systemsbiology-visualizations.googlecode.com/svn/trunk/src/main/docs/bioheatmap_examples.html)

Thank you very much for the quick reply.

Fengyuan 

On Tue, Nov 30, 2010 at 5:14 PM, Fengyuan Hu <fengyu...@gmail.com> wrote:

Hi Ryan,

Could you please give me an example?

Thanks

Fengyuan

On Tue, Nov 30, 2010 at 5:10 PM, Ryan Bressler <rbre...@systemsbiology.org> wrote:

In the past we have used a separate heatmap with different paramaters (the cells can be made smaller, the labels can be turned off) and a one column or row datatable  of evenly spaced values as a legend.

Ryan

On Tue, Nov 30, 2010 at 5:48 AM, Fengyuan Hu <fengyu...@gmail.com> wrote:

Dear developers,

I'm going to display gene expression data on the web pages for our
project. BioHeatMap so far seems the only and best solution for us.
I'm wondering if the expression intensity legend has ever been
implemented, as far as I know it's still on the TODO list of version
1.0.

Thanks
Fengyuan

--
Fengyuan Hu

Bioinformatics software programmer

modENCODE

Cambridge Systems Biology Centre & Department of Genetics

Tennis Court Road

Cambridge

CB2 1QR

UK

--
Fengyuan Hu

Bioinformatics software programmer

modENCODE

Cambridge Systems Biology Centre & Department of Genetics

Tennis Court Road

Cambridge

CB2 1QR

UK