SequenceOntology types vs SO names
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Timothy Ham
Mar 28, 2012, 2:14:10 PM3/28/12
to Synthetic Biology Data Exchange Group
Looking at SequenceOntology types (https://github.com/SynBioDex/
libSBOLj/blob/master/src/org/sbolstandard/core/util/
SequenceOntology.java)
it looks like SO names in lower case have been upper cased as types.
This follows the appropriate Java convention, but as SO names are
defined in all lower case, I think it would be helpful if there was a
method that takes standard SO names (in lower case), and returned the
appropriate org.sbolstandard.core.util.SequenceOntotology types. This
would save everyone from writing their own
"translateSONamesToSequenceOntologyType" method.
Tim
libSBOLj/blob/master/src/org/sbolstandard/core/util/
SequenceOntology.java)
it looks like SO names in lower case have been upper cased as types.
This follows the appropriate Java convention, but as SO names are
defined in all lower case, I think it would be helpful if there was a
method that takes standard SO names (in lower case), and returned the
appropriate org.sbolstandard.core.util.SequenceOntotology types. This
would save everyone from writing their own
"translateSONamesToSequenceOntologyType" method.
Tim
Michal Galdzicki
Mar 28, 2012, 2:19:30 PM3/28/12
to synb...@googlegroups.com
sounds reasonable.
I created an issue for this request here:
-mike
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