It seems to me that the water balance equation ( SWt = SWo + SUM (Rday + Qsurf - Ea - Wseep - Qgw ) ) from SWAT 2005 Theoretical Documentation (SWAT 2005 theory final.pdf) is incorrect, as it includes Qgw and Wseep.
According to the manual Qgw is
obtained from the water in the shallow aquifer and this in turn is obtained
from Wseep.
I
think that Wseep includes Qgw
so its presence in the balance equation may be incorrect. Am I right?