1. I have 15 lakes and about 20 wetlands in the basin. I did the same
way suggested by Jim to take care of multiple streams entering a
downtream watershed. But, is there a way to check if all the outflows
from upstream watersheds are considered inflows to the downstream
watershed that contains the reservoir (i.e. sum of OUTFLOW-upstream =
INFLOW-downstream; is this a valid assumption?).
2. Method to compute max area and volume: I used landsat scenes to
delineate water bodies - did an unsupervised classification on the
subset of the scene that contain the lake/reservoir. I selected two
scenes, one during the dry period to get the min area and one during
the wet period to get the max area. For most of the lakes in my basin
the average depth or volume of the lakes were known. If you know the
average water depth/volume of the lake then you can use these two
areas to compute the max volume and max area (you will still have to
make a guess about the lake level fluctuations and I think Jim's
suggestions are good enough). Addiotnally, there are several studies
on hydropower potential of Maine, done mostly in late 1800s and early
1900s. These books must have information about the lakes and ponds of
Maine. Check the hydrology book by Daniel Mead.
3. You can model the lakes as unregulated reservoirs and calibrate the
lake level/volume fluctuations based on outflows and inflows. This
would also be a good validation check of your initial lake
calculations.
4. There is an option in the ArcSWAT preprocessor that can prevent
certain land cover types from being used in the HRU thresholding. I
usually do not include water, wetlands and other land cover types that
I consider important within certain subasins.
5. The inputs for wetlands and lakes are the same. In the case of
wetlands, there is E and ET taking place at the same time which SWAT
does not distinguish (correct me if I am wrong). One way correctly
account for lake and wetland E and ET is to consider the evaporation
coefficient as a calibration parameter instead of a constant values of
0.6. The evaporation from some of the lakes in my model are highly
underestimated.