First, I'm letting you know this problem is solved "simply".
The problem was location of MODFLOW folder which should be in the same level as SWAT txtinout folder.
┌DEM : DEM input file for QSWATMOD
┣ Shapes : SHP files from SWAT model which goes to QSWATMOD
┣ test_01 : QSWATMOD project folder
│ └ MODFLOW : MODFLOW model folder build from QSWATMOD
┣ swatmodflow.qgz : QSWATMOD project file
└ TxtinOut : SWAT model txtinout folder
this should be like this :
┌DEM : DEM input file for QSWATMOD
┣ Shapes : SHP files from SWAT model which goes to QSWATMOD
┣ test_01 : QSWATMOD project folder
┣ MODFLOW : MODFLOW model folder build from QSWATMOD
┣ swatmodflow.qgz : QSWATMOD project file
└ TxtinOut : SWAT model txtinout folder
I hope no one face the problem, but if you sometime faces unknown variable or sth else that can not be solved spontaeously, please check the file location and directory.
Thank you.