Fun, and possibly even meaningful (or hopefully at least thought-provoking), correspondence to another sequence in OEIS:
https://oeis.org/A294400
To show this, I have another spreadsheet linked at bottom, but first I should address what Jelmer Firet pointed out and attempt to explain better how I define the negative space.
For the negative space values as I calculate them, the formula from Jelmer needs a "minus k" at the end, so
negative space(k) = k*(minlen(k)-k!+1) - k
This works up to n = 5 (I will now use 'n' instead of 'k'), and also for the best-known results for n =6 and n = 7. I concur the connection was a good observation by you Jelmer, so thanks for that, and I also concur we start getting divergence from A288780. However, I wonder if the particular manner of divergence might be a clue for us. At n = 6 the difference is 6 (from 918 minus 912) and at n = 7 the difference is 49 (from 6111 minus 6062). For n = 8 could the difference then be 512 (that is, 8^3)? I have run with this idea in my current spreadsheet.
To find visually the negative space, here is the procedure (other than n = 2 which is 2 by inspection):
Write a minimal superpermutation down vertically. Then, start out with each row as a transpose of length n. Many of the rows will be individual permutations, but not all rows.
Start reading the rows left to right. When you get to a row that is not an individual permutation, it will have some repeated digit from earlier in the row. Look ahead to see if the immediate next row or rows also have that problem, and jump to the last one in the set. Start carving out the "negative space" by deleting the repeated digit and anything to the right of it on that row. Then, as what is still left on that row can be read as an individual permutation when combined with the leftmost digit in a previous row or rows, retroactively delete out all but the left column in the applicable preceding row(s). For example, if I see
4123
1231
2314
then my procedure leaves me with
4___
123_
2314
and the individual permutation 4123 ends up "recorded" as a bent permutation in the n = 4 minimal superpermutation.
Similarly, the permutation 4312 gets "recorded" as bent in a different place from taking
4312
3121
1213
2134
to
4___
3___
12__
2134
The exception to this procedure is just at the very end of the superpermutation, when you end up with a clean rectangle of "negative space" because you can just write the last permutation vertically, and you don't keep rows of length less than n, so the last two individual permutations for n = 4 show up as:
1432
4
3
2
1
I hope this suffices for explanation. Given its visible nature, I continue using the "negative space" rather than converting to the "wasted digit" terminology in my new spreadsheet, which again demonstrates a correspondence to a different sequence in OEIS. I am showing a surprising (at least to me) correspondence with OEIS A294400 through n = 8 and also maintain "near agreement" through n = 11: