[sundials-users] [LLNL/sundials] spack test fails: potential issue with make flag recognition? (Issue #192)

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SamBosch77

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Aug 31, 2022, 11:53:13 AM8/31/22
to SUNDIAL...@listserv.llnl.gov

Summary:

Post-install with spack, the program fails the internal spack tests at runtime. Let me know if you need any additional information I could provide to help with this process.

Error Details:

Console output 
==> Error: TestFailure: 1 tests failed.


Command exited with status 2:
    '/usr/bin/make'
O3 -DNDEBUG -O3 -DNDEBUG -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -c test_nvector.c
O3 -DNDEBUG -O3 -DNDEBUG -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -c test_nvector_serial.c
 -o test_nvector_serial test_nvector_serial.o test_nvector.o -O3 -DNDEBUG  -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -L/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib -lsundials_nvecserial -lsundials_nvecserial -lsundials_nvecmanyvector -lm -Wl,-rpath,/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib
sh: 1: O3: not found
make: [Makefile:90: test_nvector.o] Error 127 (ignored)
sh: 1: O3: not found
make: [Makefile:90: test_nvector_serial.o] Error 127 (ignored)
sh: 3: -o: not found
make: *** [Makefile:97: examples] Error 127



1 error found in test log:
     18     -o test_nvector_serial test_nvector_serial.o test_nvector.o -O3 -DNDEBUG  -I/storage/users/sbosch/spack/opt/spack/l
           inux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -L/storage/users/sbosch/sp
           ack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib -lsundials_nvec
           serial -lsundials_nvecserial -lsundials_nvecmanyvector -lm -Wl,-rpath,/storage/users/sbosch/spack/opt/spack/linux-ub
           untu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib
     19    sh: 1: O3: not found
     20    make: [Makefile:90: test_nvector.o] Error 127 (ignored)
     21    sh: 1: O3: not found
     22    make: [Makefile:90: test_nvector_serial.o] Error 127 (ignored)
     23    sh: 3: -o: not found
  >> 24    make: *** [Makefile:97: examples] Error 127
     25
     26      File "/home/users/sbosch/spack/bin/spack", line 98, in <module>



/storage/users/sbosch/spack/lib/spack/spack/build_environment.py:1076, in _setup_pkg_and_run:
       1073        tb_string = traceback.format_exc()
       1074
       1075        # build up some context from the offending package so we can
  >>   1076        # show that, too.
       1077        package_context = get_package_context(tb)
       1078
       1079        logfile = None

See test log for details:
  /home/users/sbosch/.spack/test/qwucitp3xji6qha7vpkstq476u5ryq5j/sundials-6.2.0-xv2uy7c-test-out.txt

==> Error: 1 test(s) in the suite failed.

--- ==> Spack test qwucitp3xji6qha7vpkstq476u5ryq5j
==> Testing package sundials-6.2.0-xv2uy7c
======================== 1 failed, 0 passed of 1 specs ========================= ---
sundials-test-out.txt 
==> Testing package sundials-6.2.0-xv2uy7c
==> [2022-08-30-15:33:19.587498] Installing /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/.spack/test to /home/users/sbosch/.spack/test/qwucitp3xji6qha7vpkstq476u5ryq5j/sundials-6.2.0-xv2uy7c/cache/sundials
==> [2022-08-30-15:33:20.495317] test: make: expect command status in [0]
==> [2022-08-30-15:33:20.495832] '/usr/bin/make'
O3 -DNDEBUG -O3 -DNDEBUG -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -c test_nvector.c
O3 -DNDEBUG -O3 -DNDEBUG -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -c test_nvector_serial.c
 -o test_nvector_serial test_nvector_serial.o test_nvector.o -O3 -DNDEBUG  -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -L/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib -lsundials_nvecserial -lsundials_nvecserial -lsundials_nvecmanyvector -lm -Wl,-rpath,/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib
sh: 1: O3: not found
make: [Makefile:90: test_nvector.o] Error 127 (ignored)
sh: 1: O3: not found
make: [Makefile:90: test_nvector_serial.o] Error 127 (ignored)
sh: 3: -o: not found
make: *** [Makefile:97: examples] Error 127
FAILED: Command exited with status 2:
    '/usr/bin/make'
O3 -DNDEBUG -O3 -DNDEBUG -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -c test_nvector.c
O3 -DNDEBUG -O3 -DNDEBUG -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -c test_nvector_serial.c
 -o test_nvector_serial test_nvector_serial.o test_nvector.o -O3 -DNDEBUG  -I/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include -L/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib -lsundials_nvecserial -lsundials_nvecserial -lsundials_nvecmanyvector -lm -Wl,-rpath,/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/lib
sh: 1: O3: not found
make: [Makefile:90: test_nvector.o] Error 127 (ignored)
sh: 1: O3: not found
make: [Makefile:90: test_nvector_serial.o] Error 127 (ignored)
sh: 3: -o: not found
make: *** [Makefile:97: examples] Error 127

  File "/home/users/sbosch/spack/bin/spack", line 98, in <module>
    sys.exit(spack.main.main())
  File "/storage/users/sbosch/spack/lib/spack/spack/main.py", line 893, in main
    return _main(argv)
  File "/storage/users/sbosch/spack/lib/spack/spack/main.py", line 848, in _main
    return finish_parse_and_run(parser, cmd_name, env_format_error)
  File "/storage/users/sbosch/spack/lib/spack/spack/main.py", line 876, in finish_parse_and_run
    return _invoke_command(command, parser, args, unknown)
  File "/storage/users/sbosch/spack/lib/spack/spack/main.py", line 533, in _invoke_command
    return_val = command(parser, args)
  File "/storage/users/sbosch/spack/lib/spack/spack/cmd/test.py", line 439, in test
    globals()['test_%s' % args.test_command](args)
  File "/storage/users/sbosch/spack/lib/spack/spack/cmd/test.py", line 208, in test_run
    test_suite(remove_directory=not args.keep_stage,
  File "/storage/users/sbosch/spack/lib/spack/spack/install_test.py", line 164, in __call__
    spec.package.do_test(dirty=dirty, externals=externals)
  File "/storage/users/sbosch/spack/lib/spack/spack/package.py", line 2006, in do_test
    spack.build_environment.start_build_process(
  File "/storage/users/sbosch/spack/lib/spack/spack/build_environment.py", line 1171, in start_build_process
    p.start()
  File "/usr/lib/python3.8/multiprocessing/process.py", line 121, in start
    self._popen = self._Popen(self)
  File "/usr/lib/python3.8/multiprocessing/context.py", line 224, in _Popen
    return _default_context.get_context().Process._Popen(process_obj)
  File "/usr/lib/python3.8/multiprocessing/context.py", line 277, in _Popen
    return Popen(process_obj)
  File "/usr/lib/python3.8/multiprocessing/popen_fork.py", line 19, in __init__
    self._launch(process_obj)
  File "/usr/lib/python3.8/multiprocessing/popen_fork.py", line 75, in _launch
    code = process_obj._bootstrap(parent_sentinel=child_r)
  File "/usr/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
    self.run()
  File "/usr/lib/python3.8/multiprocessing/process.py", line 108, in run
    self._target(*self._args, **self._kwargs)
  File "/storage/users/sbosch/spack/lib/spack/spack/build_environment.py", line 1060, in _setup_pkg_and_run
    return_value = function(pkg, kwargs)
  File "/storage/users/sbosch/spack/lib/spack/spack/package.py", line 2905, in test_process
    test_fn(pkg)
  File "/storage/users/sbosch/spack/var/spack/repos/builtin/packages/sundials/package.py", line 715, in test
    self.build_smoke_tests()
  File "/storage/users/sbosch/spack/var/spack/repos/builtin/packages/sundials/package.py", line 700, in build_smoke_tests
    self.run_test(exe='make')
==> [2022-08-30-15:33:20.545100] test: cmake: expect command status in [0]
==> [2022-08-30-15:33:20.545553] '/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/cmake-3.23.1-y3d2cjiwv2qcy65ljekhm5h6ljw5kj2n/bin/cmake' '.'
-- Configuring done
-- Generating done
-- Build files have been written to: /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial
PASSED
==> [2022-08-30-15:33:20.938514] test: make: expect command status in [0]
==> [2022-08-30-15:33:20.939168] '/usr/bin/make'
[  3%] Building C object CMakeFiles/cvAdvDiff_bnd.dir/cvAdvDiff_bnd.c.o
[  7%] Linking C executable cvAdvDiff_bnd
[  7%] Built target cvAdvDiff_bnd
[ 10%] Building C object CMakeFiles/cvAnalytic_mels.dir/cvAnalytic_mels.c.o
[ 14%] Linking C executable cvAnalytic_mels
[ 14%] Built target cvAnalytic_mels
[ 17%] Building C object CMakeFiles/cvDirectDemo_ls.dir/cvDirectDemo_ls.c.o
[ 21%] Linking C executable cvDirectDemo_ls
[ 21%] Built target cvDirectDemo_ls
[ 25%] Building C object CMakeFiles/cvDisc_dns.dir/cvDisc_dns.c.o
[ 28%] Linking C executable cvDisc_dns
[ 28%] Built target cvDisc_dns
[ 32%] Building C object CMakeFiles/cvDiurnal_kry_bp.dir/cvDiurnal_kry_bp.c.o
[ 35%] Linking C executable cvDiurnal_kry_bp
[ 35%] Built target cvDiurnal_kry_bp
[ 39%] Building C object CMakeFiles/cvDiurnal_kry.dir/cvDiurnal_kry.c.o
[ 42%] Linking C executable cvDiurnal_kry
[ 42%] Built target cvDiurnal_kry
[ 46%] Building C object CMakeFiles/cvKrylovDemo_ls.dir/cvKrylovDemo_ls.c.o
[ 50%] Linking C executable cvKrylovDemo_ls
[ 50%] Built target cvKrylovDemo_ls
[ 53%] Building C object CMakeFiles/cvKrylovDemo_prec.dir/cvKrylovDemo_prec.c.o
[ 57%] Linking C executable cvKrylovDemo_prec
[ 57%] Built target cvKrylovDemo_prec
[ 60%] Building C object CMakeFiles/cvParticle_dns.dir/cvParticle_dns.c.o
[ 64%] Linking C executable cvParticle_dns
[ 64%] Built target cvParticle_dns
[ 67%] Building C object CMakeFiles/cvPendulum_dns.dir/cvPendulum_dns.c.o
[ 71%] Linking C executable cvPendulum_dns
[ 71%] Built target cvPendulum_dns
[ 75%] Building C object CMakeFiles/cvRoberts_dns.dir/cvRoberts_dns.c.o
[ 78%] Linking C executable cvRoberts_dns
[ 78%] Built target cvRoberts_dns
[ 82%] Building C object CMakeFiles/cvRoberts_dns_constraints.dir/cvRoberts_dns_constraints.c.o
[ 85%] Linking C executable cvRoberts_dns_constraints
[ 85%] Built target cvRoberts_dns_constraints
[ 89%] Building C object CMakeFiles/cvRoberts_dns_negsol.dir/cvRoberts_dns_negsol.c.o
[ 92%] Linking C executable cvRoberts_dns_negsol
[ 92%] Built target cvRoberts_dns_negsol
[ 96%] Building C object CMakeFiles/cvRoberts_dns_uw.dir/cvRoberts_dns_uw.c.o
[100%] Linking C executable cvRoberts_dns_uw
[100%] Built target cvRoberts_dns_uw
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c: In function 'main':
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:271:5: warning: 'SUNNonlinSolSetPrintLevel_Newton' is deprecated: Use SUNLogger interface instead [-Wdeprecated-declarations]
  271 |     retval = SUNNonlinSolSetPrintLevel_Newton(NLS, 1);
      |     ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:52:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunnonlinsol/sunnonlinsol_newton.h:121:21: note: declared here
  121 | SUNDIALS_EXPORT int SUNNonlinSolSetPrintLevel_Newton(SUNNonlinearSolver NLS,
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:273:5: warning: 'SUNNonlinSolSetInfoFile_Newton' is deprecated: Use SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
  273 |     retval = SUNNonlinSolSetInfoFile_Newton(NLS, infofp);
      |     ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:52:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunnonlinsol/sunnonlinsol_newton.h:117:5: note: declared here
  117 | int SUNNonlinSolSetInfoFile_Newton(SUNNonlinearSolver NLS,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:323:9: warning: 'SUNLinSolSetPrintLevel_SPGMR' is deprecated: Use SUNLogger interface instead [-Wdeprecated-declarations]
  323 |         retval = SUNLinSolSetPrintLevel_SPGMR(LS, 1);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:48:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_spgmr.h:128:5: note: declared here
  128 | int SUNLinSolSetPrintLevel_SPGMR(SUNLinearSolver LS, int print_level);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:325:9: warning: 'SUNLinSolSetInfoFile_SPGMR' is deprecated: Use SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
  325 |         retval = SUNLinSolSetInfoFile_SPGMR(LS, infofp);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:48:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_spgmr.h:125:5: note: declared here
  125 | int SUNLinSolSetInfoFile_SPGMR(SUNLinearSolver LS,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:351:9: warning: 'SUNLinSolSetPrintLevel_SPFGMR' is deprecated: Use SUNLogger interface instead [-Wdeprecated-declarations]
  351 |         retval = SUNLinSolSetPrintLevel_SPFGMR(LS, 1);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:49:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_spfgmr.h:126:5: note: declared here
  126 | int SUNLinSolSetPrintLevel_SPFGMR(SUNLinearSolver LS, int print_level);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:353:9: warning: 'SUNLinSolSetInfoFile_SPFGMR' is deprecated: Use SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
  353 |         retval = SUNLinSolSetInfoFile_SPFGMR(LS, infofp);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:49:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_spfgmr.h:123:5: note: declared here
  123 | int SUNLinSolSetInfoFile_SPFGMR(SUNLinearSolver LS,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:379:9: warning: 'SUNLinSolSetPrintLevel_SPBCGS' is deprecated: Use SUNLogger interface instead [-Wdeprecated-declarations]
  379 |         retval = SUNLinSolSetPrintLevel_SPBCGS(LS, 1);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:50:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_spbcgs.h:119:5: note: declared here
  119 | int SUNLinSolSetPrintLevel_SPBCGS(SUNLinearSolver LS, int print_level);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:381:9: warning: 'SUNLinSolSetInfoFile_SPBCGS' is deprecated: Use SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
  381 |         retval = SUNLinSolSetInfoFile_SPBCGS(LS, infofp);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:50:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_spbcgs.h:116:5: note: declared here
  116 | int SUNLinSolSetInfoFile_SPBCGS(SUNLinearSolver LS,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:407:9: warning: 'SUNLinSolSetPrintLevel_SPTFQMR' is deprecated: Use SUNLogger interface instead [-Wdeprecated-declarations]
  407 |         retval = SUNLinSolSetPrintLevel_SPTFQMR(LS, 1);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:51:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_sptfqmr.h:119:5: note: declared here
  119 | int SUNLinSolSetPrintLevel_SPTFQMR(SUNLinearSolver LS, int print_level);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:409:9: warning: 'SUNLinSolSetInfoFile_SPTFQMR' is deprecated: Use SUNLogger_SetInfoFilename instead [-Wdeprecated-declarations]
  409 |         retval = SUNLinSolSetInfoFile_SPTFQMR(LS, infofp);
      |         ^~~~~~
In file included from /storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvKrylovDemo_ls.c:51:
/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/include/sunlinsol/sunlinsol_sptfqmr.h:116:5: note: declared here
  116 | int SUNLinSolSetInfoFile_SPTFQMR(SUNLinearSolver LS,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
PASSED
==> [2022-08-30-15:33:26.894884] Test CVODE
==> [2022-08-30-15:33:26.895600] '/storage/users/sbosch/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.4.0/sundials-6.2.0-xv2uy7coj44mgpcjhzgkn7ctqc7hphg7/examples/cvode/serial/cvAdvDiff_bnd'

2-D Advection-Diffusion Equation
Mesh dimensions = 10 X 5
Total system size = 50
Tolerance parameters: reltol = 0   abstol = 1e-05

At t = 0      max.norm(u) =  8.954716e+01
At t = 0.10   max.norm(u) =  4.132889e+00   nst =   85
At t = 0.20   max.norm(u) =  1.039294e+00   nst =  103
At t = 0.30   max.norm(u) =  2.979829e-01   nst =  113
At t = 0.40   max.norm(u) =  8.765774e-02   nst =  120
At t = 0.50   max.norm(u) =  2.625637e-02   nst =  126
At t = 0.60   max.norm(u) =  7.830425e-03   nst =  130
At t = 0.70   max.norm(u) =  2.329387e-03   nst =  134
At t = 0.80   max.norm(u) =  6.953434e-04   nst =  137
At t = 0.90   max.norm(u) =  2.115983e-04   nst =  140
At t = 1.00   max.norm(u) =  6.556853e-05   nst =  142

Final Statistics:
nst = 142    nfe  = 173    nsetups = 23     nfeLS = 0      nje = 3
nni = 170    ncfn = 0      netf = 3
PASSED
==> [2022-08-30-15:33:26.912733] test: make: expect command status in [0]
==> [2022-08-30-15:33:26.913176] '/usr/bin/make' 'clean'
rm -f test_nvector.o
rm -f test_nvector_serial.o
rm -f test_nvector_serial
PASSED
==> [2022-08-30-15:33:26.945071] test: make: expect command status in [0]
==> [2022-08-30-15:33:26.945656] '/usr/bin/make' 'clean'
PASSED

System and Build Info:

spack debug report
  • Spack: 0.18.1 (13e6f87ef6527954b152eaea303841978e83b992)
  • Python: 3.8.10
  • Platform: linux-ubuntu20.04-broadwell
  • Concretizer: clingo
spack find -dvl sundials 
==> 1 installed package
-- linux-ubuntu20.04-x86_64 / g...@9.4.0 -------------------------
xv2uy7c sund...@6.2.0+ARKODE+CVODE+CVODES+IDA+IDAS+KINSOL~cuda+examples+examples-install~f2003~fcmix+generic-math~hypre~int64~ipo~klu~lapack~magma~monitoring+mpi~openmp~petsc~profiling~pthread~raja~rocm+shared+static~superlu-dist~superlu-mt~sycl~trilinos build_type=RelWithDebInfo cstd=99 cxxstd=14 logging-level=0 precision=double
y3d2cji     cm...@3.23.1~doc+ncurses+ownlibs~qt build_type=Release
7ofkj5g         ncurses@6.2~symlinks+termlib abi=none
tgufarn             pkg...@1.8.0
del3f6o         ope...@1.1.1o~docs~shared certs=system
xjse77e             pe...@5.34.1+cpanm+shared+threads
bmmadng                 berke...@18.1.40+cxx~docs+stl patches=b231fcc
ehf5627                 bz...@1.0.8~debug~pic+shared
p5ebbuy                     diffutils@3.8
qnzwa5k                         libi...@1.16 libs=shared,static
ovdf2pq                 gd...@1.19
hse57kg                     readline@8.1
cvc7wjl                 zl...@1.2.12+optimize+pic+shared patches=0d38234
rxj536c     mp...@4.0.2~argobots~cuda+fortran+hwloc+hydra+libxml2+pci~rocm+romio~slurm~two_level_namespace~vci~verbs~wrapperrpath datatype-engine=auto device=ch4 netmod=ofi pmi=pmi
icrjbgb         find...@4.9.0 patches=440b954
c3rwxom         hw...@2.7.1~cairo~cuda~gl~libudev+libxml2~netloc~nvml~opencl+pci~rocm+shared
iwj5wuv             libpci...@0.16
tueb4ra                 lib...@2.4.7
kcj4z36                     m...@1.4.19+sigsegv patches=9dc5fbd,bfdffa7
c4hxteu                         libsi...@2.13
f3hyg4w                 util-...@1.19.3
x6fwxii             lib...@2.9.13~python
22jgjfa                 x...@5.2.5+pic libs=shared,static
xwapafs         libf...@1.14.1~debug~kdreg fabrics=rxm,sockets,tcp,udp
qaanq7e         yaksa@0.2~cuda~rocm
d33hbbr             auto...@2.69 patches=35c4492,7793209,a49dd5b
kc2f75p             auto...@1.16.5
eqvhpoq             pyt...@3.8.13+bz2+ctypes+dbm~debug+ensurepip+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93,4c24573,f2fd060
poaz426                 ex...@2.4.8+libbsd
cv3ofog                     lib...@0.11.5
deksstr                         li...@1.0.4
rc7lfsx                 get...@0.21+bzip2+curses+git~libunistring+libxml2+tar+xz
mkwelay                     t...@1.34 zip=pigz
5v6qbpo                         pigz@2.7
iz2z5mz                         zs...@1.5.2+programs compression=none libs=shared,static
dpfg22g                 lib...@3.4.2
nam6ocr                 sql...@3.38.5+column_metadata+dynamic_extensions+fts~functions+rtree
j4isjhe                 util-li...@2.37.4

Spack Maintainers and Others:

@balos1
@cswoodward
@gardner48
@wspear

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