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sumatra-users

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Welcome to sumatra-users. This groups is for asking questions about the Sumatra system for reproducible research: http://neuralensemble.org/sumatra

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Apr 18

New release of Sumatra: 0.8.0

I'm very pleased to announce the release of Sumatra 0.8.0. It is almost ten years since the last

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New release of Sumatra: 0.8.0

I'm very pleased to announce the release of Sumatra 0.8.0. It is almost ten years since the last

Apr 18

3/20/20

Dependency finder for Executable plugin

Hi, I want to write an Executable plugin for some simulation software I am using. I know how to find

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Dependency finder for Executable plugin

Hi, I want to write an Executable plugin for some simulation software I am using. I know how to find

3/20/20

Felix Z. Hoffmann

11/13/17

Docker image for older Sumatra versions (0.5.2)

Dear Sumatra users, I recently needed an older version of Sumatra (0.5.2 in my case) and I have found

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Docker image for older Sumatra versions (0.5.2)

Dear Sumatra users, I recently needed an older version of Sumatra (0.5.2 in my case) and I have found

11/13/17

xase...@hotmail.de, Tim Tröndle2

9/25/17

smtweb only accessible from localhost?

Hi, yes, it's correct that smtweb runs on localhost only by default. Try the "--allips"

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smtweb only accessible from localhost?

Hi, yes, it's correct that smtweb runs on localhost only by default. Try the "--allips"

9/25/17

thomas...@boostheat.com, Andrew Davison3

9/10/17

Failed to save record due to database error. Trying again in 5 seconds. (Attempt 0/200)

Hello, Yes. Dont worry. Projects take time :) sometime we don't have. My problem is solved. But I

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Failed to save record due to database error. Trying again in 5 seconds. (Attempt 0/200)

Hello, Yes. Dont worry. Projects take time :) sometime we don't have. My problem is solved. But I

9/10/17

Ben Fogelson, Andrew Davison2

9/10/17

Upgrading fails due to attribute error

Dear Ben, I'm very sorry not to have replied to this much earlier. Due to pressure of other

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Upgrading fails due to attribute error

Dear Ben, I'm very sorry not to have replied to this much earlier. Due to pressure of other

9/10/17

Evgeniy Kuklin, Andrew Davison2

9/10/17

Hi, The use case I had in mind when implementing the "--archive" option was where the

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Hi, The use case I had in mind when implementing the "--archive" option was where the

9/10/17

Gregor Wautischer, Andrew Davison2

9/10/17

Problems when changing postgresql record store

Hi Gregor, Thanks for the suggestion. I've opened a ticket for it: https://github.com/open-

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Problems when changing postgresql record store

Hi Gregor, Thanks for the suggestion. I've opened a ticket for it: https://github.com/open-

9/10/17

joanna.ma...@twentybn.com, Andrew Davison2

9/10/17

ignoring some of the output files

Hi Joanna, This feature of saving crashed or interrupted jobs has now been added to Sumatra (see

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ignoring some of the output files

Hi Joanna, This feature of saving crashed or interrupted jobs has now been added to Sumatra (see

9/10/17

Alexandre René, Andrew Davison3

8/3/17

Track a second repository

Hi Andrew, Thanks for your reply. I traced the problem to an error being triggered when looking up

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Track a second repository

Hi Andrew, Thanks for your reply. I traced the problem to an error being triggered when looking up

8/3/17

christ...@gmx.com, Andrew Davison2

8/2/17

Development stalled?

Dear Christoph, The development pace has certainly been very slow of late, due on my side to time

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Development stalled?

Dear Christoph, The development pace has certainly been very slow of late, due on my side to time

8/2/17

5/17/17

Sumatra with no version control of code

Answering myself: 3) Use "smt run -e /path/to/release/main-script.py ..." In my other tests

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Sumatra with no version control of code

Answering myself: 3) Use "smt run -e /path/to/release/main-script.py ..." In my other tests

5/17/17

Maximilian Schmidt, Thomas Pedot6

4/14/17

Retrieve, change and save existing records

Hello, nice to hear that you find your needs. It is possible to change a record with django but it

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Retrieve, change and save existing records

Hello, nice to hear that you find your needs. It is possible to change a record with django but it

4/14/17

Maximilian Albert, … thomas...@boostheat.com11

4/12/17

Adding post-processed output files to data records (esp. for display in the web interface)

Hello, I do this with two kind of approach with web interface thanks to two powerful tools: - django

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Adding post-processed output files to data records (esp. for display in the web interface)

Hello, I do this with two kind of approach with web interface thanks to two powerful tools: - django

4/12/17

Faical Yannick Congo3

3/16/17

Video Call about a open access web platform where you could store your simulation records

Dear all, Here is the public hangouts hook: https://hangouts.google.com/call/

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Video Call about a open access web platform where you could store your simulation records

Dear all, Here is the public hangouts hook: https://hangouts.google.com/call/

3/16/17

Jacob, Andrew Davison3

8/19/16

parameter file changes to relative path

filed it, thanks: https://github.com/open-research/sumatra/issues/350 On Wednesday, August 17, 2016

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parameter file changes to relative path

filed it, thanks: https://github.com/open-research/sumatra/issues/350 On Wednesday, August 17, 2016

8/19/16

Livia Barazzetti, thomas...@boostheat.com2

4/27/16

Check duplicates from the datastore

Hello, I think you search duplicate in DataKey right ? Datastore holds where data are stored. DataKey

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Check duplicates from the datastore

Hello, I think you search duplicate in DataKey right ? Datastore holds where data are stored. DataKey

4/27/16

李鹏, … Andrew Davison5

4/14/16

import error "from sumatra.projects import Project"

Hi, It certainly seems as though you have the wrong "parameters" module. Please take a look

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import error "from sumatra.projects import Project"

Hi, It certainly seems as though you have the wrong "parameters" module. Please take a look

4/14/16

Rafael Monteiro, Maximilian Albert3

3/28/16

error after tutorial command "smt run..."

Hi Max, Thanks. The problem was the input file. On Wednesday, 16 March 2016 12:04:33 UTC-3,

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error after tutorial command "smt run..."

Hi Max, Thanks. The problem was the input file. On Wednesday, 16 March 2016 12:04:33 UTC-3,

3/28/16

Seth Flaxman, Maximilian Albert2

3/4/16

Hi Seth, Which version of Django are you using? I seem to remember that this error may be caused by a

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Hi Seth, Which version of Django are you using? I seem to remember that this error may be caused by a

3/4/16

Felix Z. Hoffmann, Yannick Congo2

2/4/16

Sumatra and Docker

Hello Felix, Very nice work. I have been working on a platform since 2014. That will bring

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Sumatra and Docker

Hello Felix, Very nice work. I have been working on a platform since 2014. That will bring

2/4/16

Ghislain Picard

11/9/15

Hello, I'm just starting with sumatra and trying to see if it can fit with my workflow. I

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Hello, I'm just starting with sumatra and trying to see if it can fit with my workflow. I

11/9/15

thomas...@boostheat.com

11/9/15

Store input if it changed (with Sumatra API)

Hello, I really like Sumatra and enjoy working with it. I would like to store/save inputs if they

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Store input if it changed (with Sumatra API)

Hello, I really like Sumatra and enjoy working with it. I would like to store/save inputs if they

11/9/15

Maximilian Albert, Andrew Davison3

11/6/15

Specifying parameter values in nested hierarchy from the command line

2015-11-05 15:10 GMT+00:00 Andrew Davison <andrew....@unic.cnrs-gif.fr>: Hi, > On 04 Nov

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Specifying parameter values in nested hierarchy from the command line

2015-11-05 15:10 GMT+00:00 Andrew Davison <andrew....@unic.cnrs-gif.fr>: Hi, > On 04 Nov

11/6/15

Maximilian Schmidt, Andrew Davison11

10/19/15

Problem upgrade 0.5.2 --> 0.7

Hi, so I repeated everything from the beginning and now it works. I guess, I must have confused some

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Problem upgrade 0.5.2 --> 0.7

Hi, so I repeated everything from the beginning and now it works. I guess, I must have confused some

10/19/15

Denis, Andrew Davison4

9/2/15

configure Sumatra server without Docker

Dear Denis, On Tuesday, 1 September 2015 23:10:26 UTC+2, Denis wrote: Dear Andrew, Thank you a lot

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configure Sumatra server without Docker

Dear Denis, On Tuesday, 1 September 2015 23:10:26 UTC+2, Denis wrote: Dear Andrew, Thank you a lot

9/2/15

Denis, Andrew Davison2

9/2/15

Sumatra and workflow management systems

Dear Denis, > On 02 Sep 2015, at 00:50, Denis <denis.s...@gmail.com> wrote: > >

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Sumatra and workflow management systems

Dear Denis, > On 02 Sep 2015, at 00:50, Denis <denis.s...@gmail.com> wrote: > >

9/2/15

Livia Barazzetti, Andrew Davison2

9/1/15

Build parameters from enviromental variables

Dear Livia, Many apologies for not replying sooner. This somehow slipped by during my summer vacation

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Build parameters from enviromental variables

Dear Livia, Many apologies for not replying sooner. This somehow slipped by during my summer vacation

9/1/15

ar...@g.harvard.edu, Andrew Davison2

9/1/15

Real-Time Update of Record

Dear Sasha, I wasn't sure how easy this would be, but it turns out to be straightforward,

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Real-Time Update of Record

Dear Sasha, I wasn't sure how easy this would be, but it turns out to be straightforward,

9/1/15

Roman Shapovalov, Andrew Davison3

7/7/15

Support for git submodules

Hi Andrew, Thanks for the answer. I've created an issue: https://github.com/open-research/sumatra

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Support for git submodules

Hi Andrew, Thanks for the answer. I've created an issue: https://github.com/open-research/sumatra

7/7/15

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