Unable to open the file infile

[Shalanee]

Hello,

I used the STRUCTURE 2.3.4 Linux version in 64 bit server with SNP data. It gave following error massages.

Reading file "mainparams".
datafile is
infile  suffolk.txt
Reading file "extraparams".
Unable to open the file infile  suffolk.txt.

Exiting the program due to error(s) listed above.

How can I fix this problem?

Thanks

Shalanee

[zeamne T]

Dear Shalanee,

I'm not sure if this will solve your problem, but assuming there are no formatting errors in your infile... what i did with my data was to copy and paste my data into the original sample infile provided by structure. And then i put in the mainparams file the name of my file as just "infile". This worked for me.

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yujie

[shalanee weerasinghe]

Thanks for your suggestion. I tried to run the same data set in the front end,it is working. So data format seems o.k.  But I can try your method too

 

Shalanee

[Adii_ (Institute of Genetics and Animal Breeding)]

U must put whole path to this file, or start program in folder where file suffolk.txt is placed.

Adii_

W dniu piątek, 21 marca 2014 03:09:11 UTC+1 użytkownik YC Tay napisał:

Dear Shalanee,

I'm not sure if this will solve your problem, but assuming there are no formatting errors in your infile... what i did with my data was to copy and paste my data into the original sample infile provided by structure. And then i put in the mainparams file the name of my file as just "infile". This worked for me.

On 20 March 2014 13:28, Shalanee <wwee...@une.edu.au> wrote:

Hello,

I used the STRUCTURE 2.3.4 Linux version in 64 bit server with SNP data. It gave following error massages.

Reading file "mainparams".
datafile is
infile  suffolk.txt
Reading file "extraparams".
Unable to open the file infile  suffolk.txt.

Exiting the program due to error(s) listed above.

How can I fix this problem?

Thanks

Shalanee

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yujie