Disclaimer: A similar question was posted by Yifang Tan in May 2020 but received no replies, so here I go...
Hi all,
I have an big dataset (1700+ samples and 64,000+ SNPs) and I ran fastStructure from K=1 to K=8 for simple prior.
When using the chooseK.py I get:
Model complexity that maximizes marginal likelihood = 5