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Welcome to the discussion group for the program Structure. Structure is used for inference of population structure in genetics.
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RN Sarma
12:43 PM
Problem in data loading
While uploading a file, it says, "107 lines with 37882 columns. Line number 1 with 37880 columns
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Problem in data loading
While uploading a file, it says, "107 lines with 37882 columns. Line number 1 with 37880 columns
12:43 PM
Jerry William Kattawar, III
, …
NURUL AFIA ABD. MAJID
5
May 21
Estimated K is weird.
I think I have a similar issue too. Have you found the solution? When I ran to identify the optimal K
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Estimated K is weird.
I think I have a similar issue too. Have you found the solution? When I ran to identify the optimal K
May 21
Joyce Estrada Gamboa
May 19
How to select the correct Repetition for a specific K
Hello everyone, I am running a STRUCTURE analysis in a Linux terminal. I got the results, and I
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How to select the correct Repetition for a specific K
Hello everyone, I am running a STRUCTURE analysis in a Linux terminal. I got the results, and I
May 19
Sydney Harned
May 15
Issues with input files
Hello, I am currently having issues with two structure input files. The first line isn't reading
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Issues with input files
Hello, I am currently having issues with two structure input files. The first line isn't reading
May 15
Filip Varga
,
Vikram Chhatre
2
May 15
ParallelStructure in R - error upon completion
In general, it's a bad idea to include spaces in either file or folder names. I would fix that
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ParallelStructure in R - error upon completion
In general, it's a bad idea to include spaces in either file or folder names. I would fix that
May 15
Danielle Velasco de Andrade
,
Sean C
2
May 13
Delta K analysis
Check each output file for LnP(K) across all replicates of K. For a given value of K, do all LnP(K)
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Delta K analysis
Check each output file for LnP(K) across all replicates of K. For a given value of K, do all LnP(K)
May 13
Alexis Omar Tarula Marin
, …
Basu Umer
3
May 8
FastStructure - Strange results
Dera brother Marlin I am a beginner of pop. gentics. I think there is no mixing within individuals,
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FastStructure - Strange results
Dera brother Marlin I am a beginner of pop. gentics. I think there is no mixing within individuals,
May 8
Marc Elosua Bayes
Apr 28
Sample names shortened
Hello. First of all - thank you so much for developing and maintaining such an incredible tool! I am
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Sample names shortened
Hello. First of all - thank you so much for developing and maintaining such an incredible tool! I am
Apr 28
M C
,
Vikram Chhatre
2
Apr 11
CLUMPP not completing for K>4
Mike - It looks like your REPEATS are not set correctly in the permutation file. Also, algorithms and
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CLUMPP not completing for K>4
Mike - It looks like your REPEATS are not set correctly in the permutation file. Also, algorithms and
Apr 11
renee....@gmail.com
3
Apr 9
Treemix line zero error
I'll also note that this looks to be an error regularly associated with using the treemix files
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Treemix line zero error
I'll also note that this looks to be an error regularly associated with using the treemix files
Apr 9
Мария Мария
Apr 6
The graphic on binary matrix is not informative
Good morning, is binary matrix works well in the Structure? We tried to build a graph using a matrix
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The graphic on binary matrix is not informative
Good morning, is binary matrix works well in the Structure? We tried to build a graph using a matrix
Apr 6
Zoe Meziere
,
Haley Arnold
2
Mar 29
Treemix - wrong values of m and i in OptM
Hi, I am experiencing the same issue. Did you ever figure out what was going on? Is this normal optM
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Treemix - wrong values of m and i in OptM
Hi, I am experiencing the same issue. Did you ever figure out what was going on? Is this normal optM
Mar 29
Mohamad Ali El Chami
Mar 13
Empty "Results " file and Warning error in STRUCTURE
Hello, I tried to run STRUCTURE software on my computer windows 10 i have problem with the output
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Empty "Results " file and Warning error in STRUCTURE
Hello, I tried to run STRUCTURE software on my computer windows 10 i have problem with the output
Mar 13
Fabrizio Olivieri
,
Vikram Chhatre
2
Mar 13
PROBLEM: structureharverster.py
How did you download the Harvester script from github? If you did not use either the clone/zip route,
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PROBLEM: structureharverster.py
How did you download the Harvester script from github? If you did not use either the clone/zip route,
Mar 13
Brent Kinser
Mar 8
Troubleshooting
Hello! I've recently added data for 35 individuals to a preexisting data set, but structure seems
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Troubleshooting
Hello! I've recently added data for 35 individuals to a preexisting data set, but structure seems
Mar 8
Ida Naughton
,
Vikram Chhatre
4
Feb 22
command line error for structure/strauto
Perhaps I don't remember and that binary was always 32bit. In any case, your best bet is to get
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command line error for structure/strauto
Perhaps I don't remember and that binary was always 32bit. In any case, your best bet is to get
Feb 22
Samuel Lam
, …
Dent Earl
3
Feb 20
Structure harvester - AttributeError
Thanks for the re-direct Vikram! Hey Sam, looking at the error message you've posted I wonder if
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Structure harvester - AttributeError
Thanks for the re-direct Vikram! Hey Sam, looking at the error message you've posted I wonder if
Feb 20
Elizabeth Collins
, …
Vikram Chhatre
5
Feb 16
How to visualize structure figures as a Mac M1 chip user
Note that the distruct I linked (https://distruct2.popgen.org) is not a new version of the Distruct
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How to visualize structure figures as a Mac M1 chip user
Note that the distruct I linked (https://distruct2.popgen.org) is not a new version of the Distruct
Feb 16
Travis Rainey
,
Vikram Chhatre
8
Feb 14
Structure Harvester with Python
You are already inside the python2 folder. So you will call the harvester script directly, not nested
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Structure Harvester with Python
You are already inside the python2 folder. So you will call the harvester script directly, not nested
Feb 14
Vaibhav Mahilang
, …
Francisco Pina Martins
14
Feb 5
Structure and Structure Threader [Estimated Ln Prob of Data]
Dear Vaibhav, I realized the issue, I noticed that in my system, the structure runs are still running
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Structure and Structure Threader [Estimated Ln Prob of Data]
Dear Vaibhav, I realized the issue, I noticed that in my system, the structure runs are still running
Feb 5
RN Sarma
,
Vikram Chhatre
2
Feb 3
Error in structure harvester.py
In order to run any python software, you have to first call python. $python structureHarvester.py
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Error in structure harvester.py
In order to run any python software, you have to first call python. $python structureHarvester.py
Feb 3
Vikram Chhatre
Jan 29
Structure Harvester
Good morning, Lately, there have been several messages about lack of access to Structure Harvester
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Structure Harvester
Good morning, Lately, there have been several messages about lack of access to Structure Harvester
Jan 29
Omar Zayas
,
Francisco Pina Martins
4
Jan 28
Structure_Threader not reading the mainparams file
Hi Omar, Glad to hear it's sorted. I have, nevertheless clarified the documentation on the --
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Structure_Threader not reading the mainparams file
Hi Omar, Glad to hear it's sorted. I have, nevertheless clarified the documentation on the --
Jan 28
Vaibhav Mahilang
,
Vikram Chhatre
3
Jan 26
STRUCTURE : STARTATPOPINFO
Yes, that is true. I have a few individuals whose popdata and popflag are set to 0. I am attaching a
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STRUCTURE : STARTATPOPINFO
Yes, that is true. I have a few individuals whose popdata and popflag are set to 0. I am attaching a
Jan 26
RN Sarma
2
Jan 25
Structure Harvester website
The error message is This site can't be reached Check if there is a typo in taylor0.biology.ucla.
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Structure Harvester website
The error message is This site can't be reached Check if there is a typo in taylor0.biology.ucla.
Jan 25
Navin Shrestha
, …
Francisco Pina Martins
9
Jan 1
error: C compiler cannot create executables while installing fastStrucutre
Hi again Navin, As far as I can tell, STRUCTURE also requires the 1 2 3 4 -9 format. I'm not sure
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error: C compiler cannot create executables while installing fastStrucutre
Hi again Navin, As far as I can tell, STRUCTURE also requires the 1 2 3 4 -9 format. I'm not sure
Jan 1
Vijay Rajamanickam
12/30/23
not able to convert VCF format into Structure format file
Dear Folks, Could you please have anyone tell me how to convert a VCF file into STRUCTURE format file
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not able to convert VCF format into Structure format file
Dear Folks, Could you please have anyone tell me how to convert a VCF file into STRUCTURE format file
12/30/23
Julius Pyton Sserumaga
,
Imiru Chimdessa
2
12/29/23
Re: [structure-group] Coding issue? running structure in R
Hi Dear, I got difficulty in that when I start to run structure software, using SNP data, it says bad
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Re: [structure-group] Coding issue? running structure in R
Hi Dear, I got difficulty in that when I start to run structure software, using SNP data, it says bad
12/29/23
Navin Shrestha
12/19/23
Installing fastSTRUCTURE in Windows
Hello all, Can I install fastSTRUCTURE in Windows? I did not see any instruction(s) for installing it
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Installing fastSTRUCTURE in Windows
Hello all, Can I install fastSTRUCTURE in Windows? I did not see any instruction(s) for installing it
12/19/23
Alexander Blumenfeld
, …
Francisco Pina Martins
6
12/1/23
Structure threader invalid literal error
Hi Miranda, I'm happy things are ok now! What you describe is really odd. The order the
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Structure threader invalid literal error
Hi Miranda, I'm happy things are ok now! What you describe is really odd. The order the
12/1/23