strelka-discuss

Strelka2 is now available from: https://github.com/Illumina/strelka This update brings numerous

I was running Strelka by using different --forceGT vcf files on the same cram. No doubt, I got all

Thanks for the fix in the configureStrelkaWorkflow.pl I managed to run Strelka1 by removing all

Hello! Which cell lines were used for EVS training?

Hi, I have used strelka for calling germline variants using BAM files without readgroups. I think

Dear Strelka developers, I use Strelka v2.9.7 to call somatic variants and have a question about EVS

having issue reference genome mismatch the length of chromosome chrM is 16569 in the reference fasta

Hi Likith, Thanks for checking. Note this email list is inactive and any current strelka issues

Hi Nick, Sorry for the delay. Note we are better able to support queries through issues filed on the

Hi Chris, I look forward to using strelka2, which by the way could be installed seamlessly. But I may

Hello expert, I have used Strelka version 1.0.15 to call SNPs of my exome data. In the output vcf

I face the same problem. Any solution for it now? Thanks. Jingzhong On Thursday, July 14, 2016 at 11:

Hi Dawn, Our ability to offer continued support for the original strelka release is fairly limited.

Hi Chris, I keep coming back to this old thread when i'm explaining (or reminding myself) what

Hello! I am using Strelka as variant caller for INDELs. I would like to obtain the number of read

Hi! There are already several posts describing to more or less details the nomenclature with TAR, TIR

Hi Lim, Have you solved this problem? I have encountered the same porblem as you, could you give me

When installing the strelka_workflow-1.0.15, I encountered an problem. make -C lib test make[3]:

Dear all, * this could decrease the runtime in case of panel / exome sequencing data as only the

Thanks for posting here Tyler! I agree, in my case too something is wrong with the bam. But I do see

Hello, I was wondering if Strelka 1 or 2, run in a tumor / normal matched mode, outputs germline

Hi everyone, I have generated the Make file. but running sudo make gives me the above mentioned error

On Tuesday, April 18, 2017 at 4:56:10 PM UTC+5:30, Saikat Banerjee wrote: hello everyone here, I am

Hello, I'm having some issues getting some human WGS samples to complete after alignment to

my maxInputDepth =10000 you can see whole config file here https://github.com/patidarr/ngs_pipeline/

Hello Baoyan, sadly I did not find any issue for this. It would be good if we could get a hint from

Were you able to slove the error you mentioned? On Thursday, April 28, 2016 at 4:16:50 AM UTC-5,

I am using strelka v1.0.15 on GSNAP aligned RNA-Seq data and i'm getting this error ERROR: Failed

Hello, I can see there is Strelka workflow and Strelka app standalone. It seems that workflow is

Hi all. I've encountered this issue in Strelka where the input is a set of BAMs I've

Hi Ryan, We are noticing here that Strelka is calling more somatic variants with low AF when our WGS