storm-yarn master fail due to enormous usage of virtual memory.
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Sean Zhong
Jan 27, 2014, 8:21:36 PM1/27/14
to storm...@googlegroups.com
storm-yarn master fail to start due to enormous usage of virtual memory.
ERROR:
================
Here is the dump of the container proc tree:
================
|- PID PPID PGRPID SESSID CMD_NAME USER_MODE_TIME(MILLIS) SYSTEM_TIME(MILLIS) VMEM_USAGE(BYTES) RSSMEM_USAGE(PAGES) FULL_CMD_LINE
|- 100412 100407 100407 100407 (java) 321 11 17834373120 47011 /usr/java/latest/bin/java -Dstorm.home=./storm/storm/ -Dlogfile.name=/var/log/hadoop-yarn/containers/application_1390831241102_0001/container_1390831241102_0001_02_000001/master.log com.yahoo.storm.yarn.MasterServer
|- 100456 100412 100407 100407 (java) 202 7 1680891904 28301 /usr/java/jdk1.6.0_31/jre/bin/java -server -Dstorm.home=./storm/storm/ -Djava.library.path=/usr/local/lib:/opt/local/lib:/usr/lib:/usr/lib64 -Dstorm.conf.file=storm.yaml -cp conf:./storm/storm/:./storm/storm/storm-starter.jar:...:./storm/storm/storm-core.jar -Xmx768m -Dlogfile.name=drpc.log backtype.storm.daemon.drpc
|- 100453 100412 100407 100407 (java) 213 8 1950203904 29480 /usr/java/jdk1.6.0_31/jre/bin/java -server -Dstorm.home=./storm/storm/ -Djava.library.path=/usr/local/lib:/opt/local/lib:/usr/lib:/usr/lib64 -Dstorm.conf.file=storm.yaml -cp conf:./storm/storm/:./storm/storm/storm-starter.jar:...:./storm/storm/storm-core.jar -Xmx1024m -Dlogfile.name=/var/log/hadoop-yarn/containers/application_1390831241102_0001/container_1390831241102_0001_02_000001/nimbus.log backtype.storm.daemon.nimbus
|- 100407 99919 100407 100407 (bash) 0 0 108703744 310 /bin/bash -c /usr/java/latest/bin/java -Dstorm.home=./storm/storm/ -Dlogfile.name=/var/log/hadoop-yarn/containers/application_1390831241102_0001/container_1390831241102_0001_02_000001/master.log com.yahoo.storm.yarn.MasterServer 1>/var/log/hadoop-yarn/containers/application_1390831241102_0001/container_1390831241102_0001_02_000001/stdout 2>/var/log/hadoop-yarn/containers/application_1390831241102_0001/container_1390831241102_0001_02_000001/stderr
|- 100454 100412 100407 100407 (java) 209 10 1679749120 29051 /usr/java/jdk1.6.0_31/jre/bin/java -server -Dstorm.home=./storm/storm/ -Djava.library.path=/usr/local/lib:/opt/local/lib:/usr/lib:/usr/lib64 -Dstorm.conf.file=storm.yaml -cp conf:./storm/storm/:./storm/storm/storm-starter.jar:...:./storm/storm/storm-core.jar -Xmx768m -Dstorm.options=nimbus.host=localhost -Dlogfile.name=/var/log/hadoop-yarn/containers/application_1390831241102_0001/container_1390831241102_0001_02_000001/ui.log backtype.storm.ui.core
From the dump:
================================
Master consumes 17GB+ virtual memory
pmap of MasterServer
================================
00001/master.log com.yahoo.storm.yarn.MasterServer
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0000000040108000 8K rwx-- /usr/java/jdk1.6.0_31/bin/java
0000000041e5b000 288K rwx-- [ anon ]
000000040d000000 28544K rwx-- [ anon ]
000000040ebe0000 55424K rwx-- [ anon ]
0000000412200000 686720K rwx-- [ anon ]
000000043c0a0000 10300160K rwx-- [ anon ]
00000006b0b60000 343296K rwx-- [ anon ]
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0000003adba20000 4K rwx-- /lib64/ld-2.12.so
0000003adba21000 4K rwx-- [ anon ]
0000003adbc00000 8K r-x-- /lib64/libdl-2.12.so
0000003adbc02000 2048K ----- /lib64/libdl-2.12.so
0000003adbe02000 4K r-x-- /lib64/libdl-2.12.so
0000003adbe03000 4K rwx-- /lib64/libdl-2.12.so
0000003adc000000 1628K r-x-- /lib64/libc-2.12.so
0000003adc197000 2048K ----- /lib64/libc-2.12.so
0000003adc397000 16K r-x-- /lib64/libc-2.12.so
0000003adc39b000 4K rwx-- /lib64/libc-2.12.so
0000003adc39c000 20K rwx-- [ anon ]
0000003adc400000 92K r-x-- /lib64/libpthread-2.12.so
0000003adc417000 2044K ----- /lib64/libpthread-2.12.so
0000003adc616000 4K r-x-- /lib64/libpthread-2.12.so
0000003adc617000 4K rwx-- /lib64/libpthread-2.12.so
0000003adc618000 16K rwx-- [ anon ]
0000003adc800000 524K r-x-- /lib64/libm-2.12.so
0000003adc883000 2044K ----- /lib64/libm-2.12.so
0000003adca82000 4K r-x-- /lib64/libm-2.12.so
0000003adca83000 4K rwx-- /lib64/libm-2.12.so
0000003add000000 28K r-x-- /lib64/librt-2.12.so
0000003add007000 2044K ----- /lib64/librt-2.12.so
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0000003add207000 4K rwx-- /lib64/librt-2.12.so
0000003aec800000 88K r-x-- /lib64/libnsl-2.12.so
0000003aec816000 2044K ----- /lib64/libnsl-2.12.so
0000003aeca15000 4K r-x-- /lib64/libnsl-2.12.so
0000003aeca16000 4K rwx-- /lib64/libnsl-2.12.so
0000003aeca17000 8K rwx-- [ anon ]
00007f9cfdcc7000 32K r-xs- /usr/java/jdk1.6.0_31/jre/lib/resources.jar
00007f9cfdccf000 12K ----- [ anon ]
00007f9cfdcd2000 1016K rwx-- [ anon ]
00007f9cfddd0000 12K ----- [ anon ]
00007f9cfddd3000 1016K rwx-- [ anon ]
00007f9cfded1000 12K ----- [ anon ]
00007f9cfded4000 1016K rwx-- [ anon ]
00007f9cfdfd2000 12K ----- [ anon ]
00007f9cfdfd5000 1016K rwx-- [ anon ]
00007f9cfe0d3000 12K ----- [ anon ]
00007f9cfe0d6000 1016K rwx-- [ anon ]
00007f9cfe1d4000 12K ----- [ anon ]
00007f9cfe1d7000 1016K rwx-- [ anon ]
00007f9cfe2d5000 12K ----- [ anon ]
00007f9cfe2d8000 1016K rwx-- [ anon ]
00007f9cfe3d6000 12K ----- [ anon ]
00007f9cfe3d9000 1016K rwx-- [ anon ]
00007f9cfe4d7000 12K ----- [ anon ]
00007f9cfe4da000 1016K rwx-- [ anon ]
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00007f9cfe5db000 28K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libnio.so
00007f9cfe5e2000 1020K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libnio.so
00007f9cfe6e1000 8K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libnio.so
00007f9cfe6e3000 12K ----- [ anon ]
00007f9cfe6e6000 1016K rwx-- [ anon ]
00007f9cfe7e4000 12K ----- [ anon ]
00007f9cfe7e7000 1016K rwx-- [ anon ]
00007f9cfe8e5000 12K ----- [ anon ]
00007f9cfe8e8000 1016K rwx-- [ anon ]
00007f9cfe9e6000 12K ----- [ anon ]
00007f9cfe9e9000 1016K rwx-- [ anon ]
00007f9cfeae7000 12K ----- [ anon ]
00007f9cfeaea000 1016K rwx-- [ anon ]
00007f9cfebe8000 12K ----- [ anon ]
00007f9cfebeb000 1016K rwx-- [ anon ]
00007f9cfece9000 12K ----- [ anon ]
00007f9cfecec000 1016K rwx-- [ anon ]
00007f9cfedea000 12K ----- [ anon ]
00007f9cfeded000 1016K rwx-- [ anon ]
00007f9cfeeeb000 12K ----- [ anon ]
00007f9cfeeee000 1016K rwx-- [ anon ]
00007f9cfefec000 12K ----- [ anon ]
00007f9cfefef000 1016K rwx-- [ anon ]
00007f9cff0ed000 24K r-xs- /usr/java/jdk1.6.0_31/jre/lib/jsse.jar
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00007f9cff0f7000 12K r-xs- /usr/java/jdk1.6.0_31/jre/lib/jce.jar
00007f9cff0fa000 4K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libjaas_unix.so
00007f9cff0fb000 1020K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libjaas_unix.so
00007f9cff1fa000 8K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libjaas_unix.so
00007f9cff1fc000 88K r-x-- /usr/lib/hadoop/lib/native/libhadoop.so.1.0.0
00007f9cff212000 2044K ----- /usr/lib/hadoop/lib/native/libhadoop.so.1.0.0
00007f9cff411000 4K rwx-- /usr/lib/hadoop/lib/native/libhadoop.so.1.0.0
00007f9cff412000 24K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libmanagement.so
00007f9cff418000 1020K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libmanagement.so
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00007f9cff519000 12K ----- [ anon ]
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00007f9cff8af000 1028K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libnet.so
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00007f9cff9ca000 4K r-xs- /mnt/disk8/hadoop/yarn/filecache/10/storm.zip/storm/lib/compojure-1.1.3.jar
00007f9cff9cb000 8K r-xs- /mnt/disk8/hadoop/yarn/filecache/10/storm.zip/storm/lib/slf4j-api-1.6.5.jar
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00007f9d300b5000 56K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libzip.so
00007f9d300c3000 1032K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libzip.so
00007f9d301c5000 12K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libzip.so
00007f9d301c8000 4K rwx-- [ anon ]
00007f9d301c9000 164K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libjava.so
00007f9d301f2000 1020K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libjava.so
00007f9d302f1000 28K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libjava.so
00007f9d302f8000 52K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libverify.so
00007f9d30305000 1020K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/libverify.so
00007f9d30404000 12K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/libverify.so
00007f9d30407000 12K ----- [ anon ]
00007f9d3040a000 1016K rwx-- [ anon ]
00007f9d30508000 9320K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/server/libjvm.so
00007f9d30e22000 1032K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/server/libjvm.so
00007f9d30f24000 1748K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/server/libjvm.so
00007f9d310d9000 244K rwx-- [ anon ]
00007f9d31116000 28K r-x-- /usr/java/jdk1.6.0_31/jre/lib/amd64/jli/libjli.so
00007f9d3111d000 1028K ----- /usr/java/jdk1.6.0_31/jre/lib/amd64/jli/libjli.so
00007f9d3121e000 8K rwx-- /usr/java/jdk1.6.0_31/jre/lib/amd64/jli/libjli.so
00007f9d31220000 4K rwx-- [ anon ]
00007f9d31221000 8K r-xs- /usr/lib/hadoop/lib/hadoop-annotations-2.2.0-Intel.jar
00007f9d31223000 4K r-xs- /usr/lib/hadoop/lib/xmlenc-0.52.jar
00007f9d31224000 8K r-xs- /usr/lib/hadoop/lib/commons-logging-1.1.1.jar
00007f9d31226000 24K r-xs- /usr/lib/hadoop/lib/commons-configuration-1.6.jar
00007f9d3122c000 32K rwxs- /tmp/hsperfdata_yarn/24041
00007f9d31234000 4K rwx-- [ anon ]
00007f9d31235000 4K r-x-- [ anon ]
00007f9d31236000 4K rwx-- [ anon ]
00007fff1f5fe000 88K rwx-- [ stack ]
00007fff1f73b000 4K r-x-- [ anon ]
ffffffffff600000 4K r-x-- [ anon ]
total 17420680K
Analysis of pmap:
=======================
There are two anno block which consumes over 15GB Virtual memory:
000000043c0a0000 10300160K rwx-- [ anon ]
00000006c5aa0000 5150080K rwx-- [ anon ]
Anno can represents heap space， do you have ideas why it take that much?
Sean Zhong
Jan 27, 2014, 9:02:17 PM1/27/14
to storm...@googlegroups.com
I didn't find the exact reason, but this issue get fixed after I specified a max heap limit.
"-server -Xmx1024m"
Should I make a PR for this?
Sean
Bobby Evans
Jan 28, 2014, 11:23:56 AM1/28/14
to Sean Zhong, storm...@googlegroups.com
Basically the issue is with YARN. The NodeManager enfaces two different memory limits. The amount of physical memory being used and the amount of virtual memory being used, which by default is set to be 2.5x the physical memory requested. Another user
complained about this same thing, and your log below shows the same thing. For some reason the AM has 17GB of virtual memory. DRPC is using 1.6, nimbus is using 1.9, and the ui is using 1.6. If you want to look into this that would be great, but I would
prefer to understand a bit more what is causing the massive amount of virtual memory to be used in the AM especially when there is only 183MB resident.
—Bobby
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