statismo-asm build error

[Ibrahim A]

Dear all,

I got this error wehen I try to build statismo-asm:

====================

[ 25%] Building CXX object CMakeFiles/fit-asm.dir/src/itkFitASM.cxx.o

In file included from <myPath>/src/itkFitASM.cxx:14:0:

<myPath>/src/ASM/itkASMFitting.h:70:35: error: ‘std::shared_ptr’ has not been declared

         void SetInternalData(std::shared_ptr<ASMMeshOperations> asmMeshOperations, ImplType statismoResult, ModelPointerType model) {

                                   ^

<myPath>/src/ASM/itkASMFitting.h:70:45: error: expected ‘,’ or ‘...’ before ‘<’ token

         void SetInternalData(std::shared_ptr<ASMMeshOperations> asmMeshOperations, ImplType statismoResult, ModelPointerType model) {

                                             ^

In file included from <myPath>/src/itkFitASM.cxx:14:0:

<myPath>/src/ASM/itkASMFitting.h:95:14: error: ‘shared_ptr’ in namespace ‘std’ does not name a template type

         std::shared_ptr<ASMMeshOperations> m_meshOperations;

              ^

<myPath>/src/ASM/itkASMFitting.h: In member function ‘void itk::ASMFittingResult<TPointSet, TImage>::SetInternalData(int)’:

<myPath>/src/ASM/itkASMFitting.h:71:13: error: ‘m_meshOperations’ was not declared in this scope

             m_meshOperations = asmMeshOperations;

             ^

<myPath>/src/ASM/itkASMFitting.h:71:32: error: ‘asmMeshOperations’ was not declared in this scope

             m_meshOperations = asmMeshOperations;

                                ^

<myPath>/src/ASM/itkASMFitting.h:72:23: error: ‘model’ was not declared in this scope

             m_model = model;

                       ^

<myPath>/src/ASM/itkASMFitting.h:73:32: error: ‘statismoResult’ was not declared in this scope

             m_statismoResult = statismoResult;

                                ^

<myPath>/src/ASM/itkASMFitting.h: In member function ‘typename TPointSet::Pointer itk::ASMFittingResult<TPointSet, TImage>::GetMesh()’:

<myPath>/src/ASM/itkASMFitting.h:90:20: error: ‘m_meshOperations’ was not declared in this scope

             return m_meshOperations->TransformMesh(instance, GetRigidTransformation());

                    ^

<myPath>/src/ASM/itkASMFitting.h: At global scope:

<myPath>/ASM/itkASMFitting.h:169:14: error: ‘shared_ptr’ in namespace ‘std’ does not name a template type

         std::shared_ptr<ASMMeshOperations> m_asmOperations;

              ^

<myPath>/src/ASM/itkASMFitting.h: In constructor ‘itk::ASMFittingStep<TPointSet, TImage>::ASMFittingStep()’:

<myPath>/src/ASM/itkASMFitting.h:127:28: error: class ‘itk::ASMFittingStep<TPointSet, TImage>’ does not have any field named ‘m_asmOperations’

         ASMFittingStep() : m_asmOperations(new ASMMeshOperations()), m_model(0), m_target(0), m_configuration(0, 0, 0), m_transform(0) { }

                            ^

<myPath>/src/ASM/itkASMFitting.h: In member function ‘void itk::ASMFittingStep<TPointSet, TImage>::Update()’:

<myPath>/src/ASM/itkASMFitting.h:154:47: error: ‘m_asmOperations’ was not declared in this scope

             ImplType *impl = ImplType::Create(m_asmOperations.get(), m_configuration, m_model->GetstatismoImplObj(), m_coeffs, m_transform,

                                               ^

In file included from /media/ibr/Ohome/ibr/sw/XXXstatismo-asm/src/itkFitASM.cxx:12:0:

<myPath>/src/ASM/itkASMIdentityImagePreprocessor.h: In instantiation of ‘typename statismo::ASMPreprocessedImage<TPointSet>::ImageType itk::ASMIdentityPreprocessedImage<TPointSet, TImage>::GetType() const [with TPointSet = itk::Mesh<float, 3u>; TImage = itk::Image<float, 3u>; typename statismo::ASMPreprocessedImage<TPointSet>::ImageType = statismo::ASMPreprocessedImage<itk::Mesh<float, 3u> >::ImageType]’:

<myPath>/src/itkFitASM.cxx:134:1:   required from here

<myPath>/src/ASM/itkASMIdentityImagePreprocessor.h:68:74: error: ‘Intensity’ is not a member of ‘statismo::ASMPreprocessedImage<itk::Mesh<float, 3u> >::ImageType’

             return statismo::ASMPreprocessedImage<TPointSet>::ImageType::Intensity;

                                                                          ^

make[2]: *** [CMakeFiles/fit-asm.dir/src/itkFitASM.cxx.o] Error 1

make[1]: *** [CMakeFiles/fit-asm.dir/all] Error 2

make: *** [all] Error 2

====================

any suggestion?

I have Ubuntu 14. 

Best gregards,

Ibraheem

[Ibrahim A]

This is the link where I downloaded the sw: https://github.com/statismo/statismo-asm

[Marcel Luethi]

Hi Ibraheem,

The problem is that C++11 support is not switched on. I have just pushed a commit, such that this is done automatically for you. Hence if you pull the latest version from github it should compile.

Note, however, that statismo-asm is still experimental and not as well tested as the rest of statismo. Also, while I will try my best to help with advise if things are not working, I am currently not able to invest much time into the project.

Best regards,

Marcel

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[Marcel Luethi]

Statismo-ASM requires the lastest (currently still unreleased) version of statismo. See the statismo-asm README. You should check out and use the branch vs2015 of statismo.

Best regards,

Marcel

ps. A new release of statismo is in the pipeline

On Tue, Feb 14, 2017 at 2:57 PM, Ibrahim A <ibr...@gmail.com> wrote:

Hi Marcel,

many thanks for your quick reply. I understand the situation, it would be nice if you can help with such small stuff. I downloaded the updated source and now I get file missing error::

[ 25%] Building CXX object CMakeFiles/fit-asm.dir/src/itkFitASM.cxx.o

In file included from ~/statismo-asm/src/ASM/ASMFitting.h:40:0,

                 from ~/statismo-asm/src/itkFitASM.cxx:7:

~/statismo-asm/src/ASM/ActiveShapeModel.h:43:24: fatal error: StatismoIO.h: No such file or directory

 #include "StatismoIO.h"

                        ^

compilation terminated.

make[2]: *** [CMakeFiles/fit-asm.dir/src/itkFitASM.cxx.o] Error 1

make[1]: *** [CMakeFiles/fit-asm.dir/all] Error 2

I searched for the file  StatismoIO.h but it is not found in statismo source or build. 

Best regards,

Ibraheem