Hi Josh et al.,
The problem is in the first measure of the MusicXML data on lines 92–94:
This moves back the timeline by a 16th note (colliding with the duration of the first 8th note and causing the problem by positioning the next note before the previous one has ended).
Also a similar problem on lines 182–194 at the end of measure one where there is a gratuitous backup of an 8th note:

There is also a reverse problem:
This also needs to be removed in the first measure.
(no other problems that I see in the score). It looks like you (or your student :-) might have been editing the file to create a monophonic score ("mel" in the filename). And somehow something got confused in the data which then caused problems in the MusicXML export. The file was created by MusicXML 3.1.0 (maybe upgrading Musescore 4 might help avoid such problems).
Removing these lines before converting to Humdrum fixes the problem:
Attached is the fixed input and updated output.
Also the file loads into MuseScore 4.4.4 with this message:
"Opening anyway" results in a strange gray rest added (caused by the <forward>) in first measure) and a gray plus meaning the measure is overfilled:
Musescore ignores the problem caused by the backup by how it converted the MusicXML data.
-=+Craig